Hb_000174_050

Information

Type -
Description -
Location Contig174: 61828-65416
Sequence    

Annotation

kegg
ID pop:POPTR_0010s18810g
description POPTRDRAFT_833741; hypothetical protein
nr
ID XP_011015009.1
description PREDICTED: gamma-tubulin complex component 2 [Populus euphratica]
swissprot
ID Q9C5H9
description Gamma-tubulin complex component 2 OS=Arabidopsis thaliana GN=GCP2 PE=1 SV=1
trembl
ID U5G241
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s18810g PE=4 SV=1
Gene Ontology
ID GO:0000922
description gamma-tubulin complex component 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000174_050 0.0 - - PREDICTED: gamma-tubulin complex component 2 [Populus euphratica]
2 Hb_000684_260 0.1513106857 - - PREDICTED: probable DNA helicase MCM8 isoform X2 [Jatropha curcas]
3 Hb_002960_150 0.1654732942 - - hypothetical protein CISIN_1g029215mg [Citrus sinensis]
4 Hb_002217_380 0.171119627 - - PREDICTED: uncharacterized protein LOC105643567 [Jatropha curcas]
5 Hb_086022_010 0.1718766171 - - PREDICTED: succinate dehydrogenase assembly factor 1 homolog, mitochondrial [Nicotiana tomentosiformis]
6 Hb_000916_070 0.1898909893 - - PREDICTED: sister chromatid cohesion protein DCC1-like [Jatropha curcas]
7 Hb_010655_020 0.1905778314 - - hypothetical protein CICLE_v10032410mg [Citrus clementina]
8 Hb_008566_040 0.1942659228 - - PREDICTED: uncharacterized protein LOC105647590 isoform X1 [Jatropha curcas]
9 Hb_161478_010 0.1960780419 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_003669_010 0.1979434221 - - PREDICTED: psbP domain-containing protein 5, chloroplastic [Populus euphratica]
11 Hb_001085_260 0.1988344846 - - PREDICTED: uncharacterized protein LOC105633184 [Jatropha curcas]
12 Hb_007477_030 0.1995589891 - - PREDICTED: monothiol glutaredoxin-S10-like [Jatropha curcas]
13 Hb_000544_030 0.200758772 - - conserved hypothetical protein [Ricinus communis]
14 Hb_011287_040 0.2044176673 - - PREDICTED: OTU domain-containing protein At3g57810-like isoform X1 [Jatropha curcas]
15 Hb_007786_030 0.205452843 - - PREDICTED: ribonucleoside-diphosphate reductase large subunit [Jatropha curcas]
16 Hb_002122_010 0.2105055753 - - -
17 Hb_010883_140 0.2107222623 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
18 Hb_000622_350 0.2133249881 - - PREDICTED: protein ABIL1 [Jatropha curcas]
19 Hb_004466_040 0.2135094664 - - PREDICTED: protein RER1B-like [Gossypium raimondii]
20 Hb_003605_040 0.2146343364 - - PREDICTED: somatic embryogenesis receptor kinase 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000174_050 Hb_000174_050 Hb_000684_260 Hb_000684_260 Hb_000174_050--Hb_000684_260 Hb_002960_150 Hb_002960_150 Hb_000174_050--Hb_002960_150 Hb_002217_380 Hb_002217_380 Hb_000174_050--Hb_002217_380 Hb_086022_010 Hb_086022_010 Hb_000174_050--Hb_086022_010 Hb_000916_070 Hb_000916_070 Hb_000174_050--Hb_000916_070 Hb_010655_020 Hb_010655_020 Hb_000174_050--Hb_010655_020 Hb_051257_010 Hb_051257_010 Hb_000684_260--Hb_051257_010 Hb_008566_040 Hb_008566_040 Hb_000684_260--Hb_008566_040 Hb_000889_100 Hb_000889_100 Hb_000684_260--Hb_000889_100 Hb_000684_260--Hb_002960_150 Hb_007786_030 Hb_007786_030 Hb_000684_260--Hb_007786_030 Hb_000622_350 Hb_000622_350 Hb_000684_260--Hb_000622_350 Hb_002960_150--Hb_000916_070 Hb_001085_260 Hb_001085_260 Hb_002960_150--Hb_001085_260 Hb_124373_010 Hb_124373_010 Hb_002960_150--Hb_124373_010 Hb_007017_080 Hb_007017_080 Hb_002960_150--Hb_007017_080 Hb_000622_130 Hb_000622_130 Hb_002960_150--Hb_000622_130 Hb_010368_050 Hb_010368_050 Hb_002960_150--Hb_010368_050 Hb_002217_380--Hb_086022_010 Hb_008511_060 Hb_008511_060 Hb_002217_380--Hb_008511_060 Hb_000556_150 Hb_000556_150 Hb_002217_380--Hb_000556_150 Hb_000608_110 Hb_000608_110 Hb_002217_380--Hb_000608_110 Hb_007919_080 Hb_007919_080 Hb_002217_380--Hb_007919_080 Hb_076874_010 Hb_076874_010 Hb_002217_380--Hb_076874_010 Hb_004466_040 Hb_004466_040 Hb_086022_010--Hb_004466_040 Hb_086022_010--Hb_000608_110 Hb_086022_010--Hb_000556_150 Hb_086022_010--Hb_008511_060 Hb_007951_040 Hb_007951_040 Hb_086022_010--Hb_007951_040 Hb_000916_070--Hb_000622_130 Hb_067130_010 Hb_067130_010 Hb_000916_070--Hb_067130_010 Hb_000916_070--Hb_124373_010 Hb_000916_070--Hb_010368_050 Hb_003001_090 Hb_003001_090 Hb_000916_070--Hb_003001_090 Hb_010655_020--Hb_007786_030 Hb_000230_180 Hb_000230_180 Hb_010655_020--Hb_000230_180 Hb_002122_010 Hb_002122_010 Hb_010655_020--Hb_002122_010 Hb_010655_020--Hb_000684_260 Hb_010003_010 Hb_010003_010 Hb_010655_020--Hb_010003_010 Hb_010655_020--Hb_051257_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.237178 0.0168035 0.479264 0.767368 0.217444 0.279299
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0923782 0.21798 0.0671852 0.102094 0.0747037

CAGE analysis