Hb_074836_010

Information

Type -
Description -
Location Contig74836: 526-1064
Sequence    

Annotation

kegg
ID rcu:RCOM_0724580
description hypothetical protein
nr
ID XP_002524890.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SFX1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0724580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56766: 517-1149 , PASA_asmbl_56767: 640-941
cDNA
(Sanger)
(ID:Location)		 040_F12.ab1: 517-1149

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_074836_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000926_230 0.1977419473 - - conserved hypothetical protein [Ricinus communis]
3 Hb_009620_090 0.2123049107 - - hypothetical protein L484_000980 [Morus notabilis]
4 Hb_155541_010 0.217663737 - - -
5 Hb_164255_010 0.2294400425 - - PREDICTED: aspartate-semialdehyde dehydrogenase [Jatropha curcas]
6 Hb_001545_050 0.2384110998 - - PREDICTED: ras-related protein Rab7 [Nicotiana sylvestris]
7 Hb_118228_010 0.2410139537 - - PREDICTED: pirin-like protein [Jatropha curcas]
8 Hb_000302_130 0.2420183307 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
9 Hb_006907_100 0.2432108427 - - PREDICTED: tropinone reductase-like 3 [Jatropha curcas]
10 Hb_009051_020 0.2450968052 - - Thioredoxin O1 [Morus notabilis]
11 Hb_011485_090 0.2497817116 - - -
12 Hb_010488_040 0.2512691419 - - PREDICTED: phosphomannomutase [Populus euphratica]
13 Hb_000139_490 0.2531347462 - - PREDICTED: transcription factor MUTE [Jatropha curcas]
14 Hb_011942_010 0.2547767871 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000742_190 0.2553508009 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_089140_120 0.2553974528 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
17 Hb_128473_010 0.2567536715 - - -
18 Hb_000959_310 0.2571544748 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
19 Hb_000544_030 0.2588814116 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000743_030 0.2590512816 - - NmrA-like negative transcriptional regulator family protein [Theobroma cacao]

Gene co-expression network

sample Hb_074836_010 Hb_074836_010 Hb_000926_230 Hb_000926_230 Hb_074836_010--Hb_000926_230 Hb_009620_090 Hb_009620_090 Hb_074836_010--Hb_009620_090 Hb_155541_010 Hb_155541_010 Hb_074836_010--Hb_155541_010 Hb_164255_010 Hb_164255_010 Hb_074836_010--Hb_164255_010 Hb_001545_050 Hb_001545_050 Hb_074836_010--Hb_001545_050 Hb_118228_010 Hb_118228_010 Hb_074836_010--Hb_118228_010 Hb_000139_490 Hb_000139_490 Hb_000926_230--Hb_000139_490 Hb_000926_230--Hb_009620_090 Hb_001005_160 Hb_001005_160 Hb_000926_230--Hb_001005_160 Hb_089140_120 Hb_089140_120 Hb_000926_230--Hb_089140_120 Hb_000926_230--Hb_001545_050 Hb_002397_060 Hb_002397_060 Hb_009620_090--Hb_002397_060 Hb_010488_040 Hb_010488_040 Hb_009620_090--Hb_010488_040 Hb_000174_050 Hb_000174_050 Hb_009620_090--Hb_000174_050 Hb_000544_030 Hb_000544_030 Hb_009620_090--Hb_000544_030 Hb_011485_090 Hb_011485_090 Hb_155541_010--Hb_011485_090 Hb_155541_010--Hb_118228_010 Hb_005928_050 Hb_005928_050 Hb_155541_010--Hb_005928_050 Hb_000302_130 Hb_000302_130 Hb_155541_010--Hb_000302_130 Hb_010913_010 Hb_010913_010 Hb_155541_010--Hb_010913_010 Hb_006907_100 Hb_006907_100 Hb_155541_010--Hb_006907_100 Hb_010068_100 Hb_010068_100 Hb_164255_010--Hb_010068_100 Hb_001269_290 Hb_001269_290 Hb_164255_010--Hb_001269_290 Hb_164255_010--Hb_001545_050 Hb_082407_010 Hb_082407_010 Hb_164255_010--Hb_082407_010 Hb_164255_010--Hb_000926_230 Hb_000028_060 Hb_000028_060 Hb_001545_050--Hb_000028_060 Hb_007123_060 Hb_007123_060 Hb_001545_050--Hb_007123_060 Hb_003925_070 Hb_003925_070 Hb_001545_050--Hb_003925_070 Hb_153258_050 Hb_153258_050 Hb_001545_050--Hb_153258_050 Hb_001902_130 Hb_001902_130 Hb_001545_050--Hb_001902_130 Hb_004883_050 Hb_004883_050 Hb_001545_050--Hb_004883_050 Hb_118228_010--Hb_011485_090 Hb_001828_100 Hb_001828_100 Hb_118228_010--Hb_001828_100 Hb_118228_010--Hb_010913_010 Hb_000261_170 Hb_000261_170 Hb_118228_010--Hb_000261_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.7587 4.38502 11.6772 19.1768 1.27913 7.43314
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0467 7.89121 0 0 0

CAGE analysis