Hb_006907_100

Information

Type -
Description -
Location Contig6907: 51882-54809
Sequence    

Annotation

kegg
ID pop:POPTR_0011s00810g
description POPTRDRAFT_727523; hypothetical protein
nr
ID XP_012091265.1
description PREDICTED: tropinone reductase-like 3 [Jatropha curcas]
swissprot
ID H9BFQ2
description Tropinone reductase-like 3 OS=Erythroxylum coca PE=2 SV=1
trembl
ID A0A067JD54
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21154 PE=4 SV=1
Gene Ontology
ID GO:0016491
description tropinone reductase-like 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54325: 52158-54711
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006907_100 0.0 - - PREDICTED: tropinone reductase-like 3 [Jatropha curcas]
2 Hb_000302_130 0.1375355254 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
3 Hb_000743_030 0.1687840287 - - NmrA-like negative transcriptional regulator family protein [Theobroma cacao]
4 Hb_005000_250 0.1910423631 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 4, mitochondrial [Vitis vinifera]
5 Hb_000122_050 0.1954458596 - - conserved hypothetical protein [Ricinus communis]
6 Hb_155541_010 0.1960468384 - - -
7 Hb_005928_050 0.2006809694 - - glutathione reductase [Hevea brasiliensis]
8 Hb_089140_120 0.2007308037 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
9 Hb_000926_230 0.2058899365 - - conserved hypothetical protein [Ricinus communis]
10 Hb_171718_020 0.205986509 - - hypothetical protein JCGZ_00274 [Jatropha curcas]
11 Hb_001771_080 0.2062767378 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Amborella trichopoda]
12 Hb_000264_290 0.2074470497 - - PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Jatropha curcas]
13 Hb_001911_040 0.2125212325 - - PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
14 Hb_149714_010 0.2127375233 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like [Jatropha curcas]
15 Hb_001269_290 0.2168100335 - - PREDICTED: uncharacterized protein LOC103438859 [Malus domestica]
16 Hb_089140_010 0.2168635501 - - -
17 Hb_011485_090 0.2169077492 - - -
18 Hb_001486_020 0.2194107282 - - hypothetical protein JCGZ_02719 [Jatropha curcas]
19 Hb_100105_010 0.2204128356 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
20 Hb_009557_030 0.2234521482 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-52-like [Jatropha curcas]

Gene co-expression network

sample Hb_006907_100 Hb_006907_100 Hb_000302_130 Hb_000302_130 Hb_006907_100--Hb_000302_130 Hb_000743_030 Hb_000743_030 Hb_006907_100--Hb_000743_030 Hb_005000_250 Hb_005000_250 Hb_006907_100--Hb_005000_250 Hb_000122_050 Hb_000122_050 Hb_006907_100--Hb_000122_050 Hb_155541_010 Hb_155541_010 Hb_006907_100--Hb_155541_010 Hb_005928_050 Hb_005928_050 Hb_006907_100--Hb_005928_050 Hb_000264_290 Hb_000264_290 Hb_000302_130--Hb_000264_290 Hb_100105_010 Hb_100105_010 Hb_000302_130--Hb_100105_010 Hb_000302_130--Hb_000743_030 Hb_000302_130--Hb_000122_050 Hb_012120_030 Hb_012120_030 Hb_000302_130--Hb_012120_030 Hb_001911_040 Hb_001911_040 Hb_000743_030--Hb_001911_040 Hb_006570_150 Hb_006570_150 Hb_000743_030--Hb_006570_150 Hb_001221_220 Hb_001221_220 Hb_000743_030--Hb_001221_220 Hb_000538_240 Hb_000538_240 Hb_000743_030--Hb_000538_240 Hb_002631_280 Hb_002631_280 Hb_000743_030--Hb_002631_280 Hb_000422_030 Hb_000422_030 Hb_000743_030--Hb_000422_030 Hb_005000_250--Hb_000302_130 Hb_007136_010 Hb_007136_010 Hb_005000_250--Hb_007136_010 Hb_171718_020 Hb_171718_020 Hb_005000_250--Hb_171718_020 Hb_170674_010 Hb_170674_010 Hb_005000_250--Hb_170674_010 Hb_003305_030 Hb_003305_030 Hb_005000_250--Hb_003305_030 Hb_000086_340 Hb_000086_340 Hb_000122_050--Hb_000086_340 Hb_000122_050--Hb_001911_040 Hb_000302_260 Hb_000302_260 Hb_000122_050--Hb_000302_260 Hb_149714_010 Hb_149714_010 Hb_000122_050--Hb_149714_010 Hb_009545_090 Hb_009545_090 Hb_000122_050--Hb_009545_090 Hb_011485_090 Hb_011485_090 Hb_155541_010--Hb_011485_090 Hb_118228_010 Hb_118228_010 Hb_155541_010--Hb_118228_010 Hb_155541_010--Hb_005928_050 Hb_155541_010--Hb_000302_130 Hb_010913_010 Hb_010913_010 Hb_155541_010--Hb_010913_010 Hb_005928_050--Hb_000122_050 Hb_005928_050--Hb_000302_130 Hb_001269_290 Hb_001269_290 Hb_005928_050--Hb_001269_290 Hb_005928_050--Hb_011485_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.80703 4.71483 5.00379 5.28267 1.11791 1.20747
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.32099 4.75262 0.351511 0.554644 0

CAGE analysis