Hb_011485_090

Information

Type -
Description -
Location Contig11485: 90582-91413
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011485_090 0.0 - - -
2 Hb_155541_010 0.1615499467 - - -
3 Hb_118228_010 0.1857234647 - - PREDICTED: pirin-like protein [Jatropha curcas]
4 Hb_000926_230 0.2127728566 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006907_100 0.2169077492 - - PREDICTED: tropinone reductase-like 3 [Jatropha curcas]
6 Hb_000302_130 0.218410853 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
7 Hb_089140_120 0.2205924662 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
8 Hb_000743_030 0.2252551452 - - NmrA-like negative transcriptional regulator family protein [Theobroma cacao]
9 Hb_000856_060 0.241419676 - - -
10 Hb_010913_010 0.2417314093 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
11 Hb_000654_030 0.2430449694 - - -
12 Hb_000089_200 0.246665802 - - hypothetical protein VITISV_019292 [Vitis vinifera]
13 Hb_010789_020 0.2468054004 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
14 Hb_128473_010 0.2485732732 - - -
15 Hb_074836_010 0.2497817116 - - conserved hypothetical protein [Ricinus communis]
16 Hb_024879_010 0.250090344 - - unknown [Glycine max]
17 Hb_089140_010 0.2504590506 - - -
18 Hb_005928_050 0.2513395387 - - glutathione reductase [Hevea brasiliensis]
19 Hb_000959_310 0.2540893957 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
20 Hb_012120_030 0.2547462089 - - -

Gene co-expression network

sample Hb_011485_090 Hb_011485_090 Hb_155541_010 Hb_155541_010 Hb_011485_090--Hb_155541_010 Hb_118228_010 Hb_118228_010 Hb_011485_090--Hb_118228_010 Hb_000926_230 Hb_000926_230 Hb_011485_090--Hb_000926_230 Hb_006907_100 Hb_006907_100 Hb_011485_090--Hb_006907_100 Hb_000302_130 Hb_000302_130 Hb_011485_090--Hb_000302_130 Hb_089140_120 Hb_089140_120 Hb_011485_090--Hb_089140_120 Hb_155541_010--Hb_118228_010 Hb_005928_050 Hb_005928_050 Hb_155541_010--Hb_005928_050 Hb_155541_010--Hb_000302_130 Hb_010913_010 Hb_010913_010 Hb_155541_010--Hb_010913_010 Hb_155541_010--Hb_006907_100 Hb_001828_100 Hb_001828_100 Hb_118228_010--Hb_001828_100 Hb_074836_010 Hb_074836_010 Hb_118228_010--Hb_074836_010 Hb_118228_010--Hb_010913_010 Hb_000261_170 Hb_000261_170 Hb_118228_010--Hb_000261_170 Hb_000139_490 Hb_000139_490 Hb_000926_230--Hb_000139_490 Hb_009620_090 Hb_009620_090 Hb_000926_230--Hb_009620_090 Hb_001005_160 Hb_001005_160 Hb_000926_230--Hb_001005_160 Hb_000926_230--Hb_089140_120 Hb_001545_050 Hb_001545_050 Hb_000926_230--Hb_001545_050 Hb_000926_230--Hb_074836_010 Hb_006907_100--Hb_000302_130 Hb_000743_030 Hb_000743_030 Hb_006907_100--Hb_000743_030 Hb_005000_250 Hb_005000_250 Hb_006907_100--Hb_005000_250 Hb_000122_050 Hb_000122_050 Hb_006907_100--Hb_000122_050 Hb_006907_100--Hb_005928_050 Hb_000264_290 Hb_000264_290 Hb_000302_130--Hb_000264_290 Hb_100105_010 Hb_100105_010 Hb_000302_130--Hb_100105_010 Hb_000302_130--Hb_000743_030 Hb_000302_130--Hb_000122_050 Hb_012120_030 Hb_012120_030 Hb_000302_130--Hb_012120_030 Hb_010789_020 Hb_010789_020 Hb_089140_120--Hb_010789_020 Hb_000438_090 Hb_000438_090 Hb_089140_120--Hb_000438_090 Hb_001486_020 Hb_001486_020 Hb_089140_120--Hb_001486_020 Hb_089140_120--Hb_000743_030 Hb_001911_040 Hb_001911_040 Hb_089140_120--Hb_001911_040 Hb_010053_040 Hb_010053_040 Hb_089140_120--Hb_010053_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.242023 0.191587 0.245727 0.658317 0.148495 0.0665283
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.346742 0.27235 0 0.115223 0

CAGE analysis