Hb_000122_050

Information

Type -
Description -
Location Contig122: 53355-53819
Sequence    

Annotation

kegg
ID rcu:RCOM_0688570
description hypothetical protein
nr
ID XP_002520818.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P20144
description Wound-induced protein 1 OS=Solanum tuberosum GN=WUN1 PE=2 SV=1
trembl
ID B9S499
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0688570 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06656: 53240-54173
cDNA
(Sanger)
(ID:Location)		 011_D12.ab1: 53240-54067 , 035_O20.ab1: 53240-53994

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000122_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000086_340 0.1388386989 - - PREDICTED: uncharacterized protein LOC100253191 [Vitis vinifera]
3 Hb_001911_040 0.1535717722 - - PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
4 Hb_000302_260 0.154528923 - - hypothetical protein [Bruguiera gymnorhiza]
5 Hb_149714_010 0.1545997277 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like [Jatropha curcas]
6 Hb_000302_130 0.1588628161 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
7 Hb_009545_090 0.1605980523 - - hypothetical protein JCGZ_02186 [Jatropha curcas]
8 Hb_000282_030 0.1674313671 - - K(+) efflux antiporter 4 [Glycine soja]
9 Hb_000170_240 0.1674933803 - - PREDICTED: auxilin-related protein 1 [Jatropha curcas]
10 Hb_005306_190 0.1679948183 - - Mitochondrial import inner membrane translocase subunit tim23, putative [Ricinus communis]
11 Hb_030116_010 0.1698772598 - - F-box protein, atfbl3, putative [Ricinus communis]
12 Hb_001486_020 0.1732528984 - - hypothetical protein JCGZ_02719 [Jatropha curcas]
13 Hb_000363_330 0.1742748578 - - -
14 Hb_007943_050 0.1769909586 - - peroxiredoxin, putative [Ricinus communis]
15 Hb_028487_020 0.1774214942 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]
16 Hb_021443_090 0.1777421021 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
17 Hb_005146_080 0.177986706 - - PREDICTED: uncharacterized protein LOC105636704 isoform X2 [Jatropha curcas]
18 Hb_000538_240 0.1800197193 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
19 Hb_002641_070 0.1816472867 - - PREDICTED: transcription factor bHLH147-like [Jatropha curcas]
20 Hb_000357_110 0.1822682269 - - PREDICTED: uncharacterized protein LOC105643970 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000122_050 Hb_000122_050 Hb_000086_340 Hb_000086_340 Hb_000122_050--Hb_000086_340 Hb_001911_040 Hb_001911_040 Hb_000122_050--Hb_001911_040 Hb_000302_260 Hb_000302_260 Hb_000122_050--Hb_000302_260 Hb_149714_010 Hb_149714_010 Hb_000122_050--Hb_149714_010 Hb_000302_130 Hb_000302_130 Hb_000122_050--Hb_000302_130 Hb_009545_090 Hb_009545_090 Hb_000122_050--Hb_009545_090 Hb_000086_340--Hb_149714_010 Hb_000086_340--Hb_000302_260 Hb_000475_040 Hb_000475_040 Hb_000086_340--Hb_000475_040 Hb_030116_010 Hb_030116_010 Hb_000086_340--Hb_030116_010 Hb_155599_010 Hb_155599_010 Hb_000086_340--Hb_155599_010 Hb_011671_480 Hb_011671_480 Hb_001911_040--Hb_011671_480 Hb_001911_040--Hb_009545_090 Hb_000538_240 Hb_000538_240 Hb_001911_040--Hb_000538_240 Hb_000743_030 Hb_000743_030 Hb_001911_040--Hb_000743_030 Hb_001829_040 Hb_001829_040 Hb_001911_040--Hb_001829_040 Hb_000357_110 Hb_000357_110 Hb_001911_040--Hb_000357_110 Hb_002042_130 Hb_002042_130 Hb_000302_260--Hb_002042_130 Hb_000402_210 Hb_000402_210 Hb_000302_260--Hb_000402_210 Hb_028487_020 Hb_028487_020 Hb_000302_260--Hb_028487_020 Hb_189208_020 Hb_189208_020 Hb_000302_260--Hb_189208_020 Hb_088753_010 Hb_088753_010 Hb_000302_260--Hb_088753_010 Hb_149714_010--Hb_000475_040 Hb_149714_010--Hb_000302_260 Hb_149714_010--Hb_030116_010 Hb_000264_290 Hb_000264_290 Hb_149714_010--Hb_000264_290 Hb_000302_130--Hb_000264_290 Hb_006907_100 Hb_006907_100 Hb_000302_130--Hb_006907_100 Hb_100105_010 Hb_100105_010 Hb_000302_130--Hb_100105_010 Hb_000302_130--Hb_000743_030 Hb_012120_030 Hb_012120_030 Hb_000302_130--Hb_012120_030 Hb_005015_080 Hb_005015_080 Hb_009545_090--Hb_005015_080 Hb_007943_050 Hb_007943_050 Hb_009545_090--Hb_007943_050 Hb_002232_480 Hb_002232_480 Hb_009545_090--Hb_002232_480 Hb_002869_050 Hb_002869_050 Hb_009545_090--Hb_002869_050 Hb_003925_040 Hb_003925_040 Hb_009545_090--Hb_003925_040 Hb_002553_040 Hb_002553_040 Hb_009545_090--Hb_002553_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
144.471 323.431 105.643 249.357 59.6091 105.026
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
126.753 198.417 45.6712 67.596 8.75315

CAGE analysis