Hb_149714_010

Information

Type transcription factor
Description TF Family: NAC
Location Contig149714: 15-433
Sequence    

Annotation

kegg
ID rcu:RCOM_1326820
description transcription factor, putative
nr
ID XP_012070224.1
description PREDICTED: transcription factor JUNGBRUNNEN 1-like [Jatropha curcas]
swissprot
ID Q94F58
description NAC domain-containing protein 89 OS=Arabidopsis thaliana GN=NAC089 PE=1 SV=1
trembl
ID R4NEX4
description NAC transcription factor 075 OS=Jatropha curcas GN=JCGZ_02538 PE=4 SV=1
Gene Ontology
ID GO:0003677
description nac domain-containing protein 89-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_149714_010 0.0 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like [Jatropha curcas]
2 Hb_000086_340 0.1059725071 - - PREDICTED: uncharacterized protein LOC100253191 [Vitis vinifera]
3 Hb_000475_040 0.1533568808 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
4 Hb_000122_050 0.1545997277 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000302_260 0.1712882301 - - hypothetical protein [Bruguiera gymnorhiza]
6 Hb_030116_010 0.1759069456 - - F-box protein, atfbl3, putative [Ricinus communis]
7 Hb_000264_290 0.1803194403 - - PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Jatropha curcas]
8 Hb_000302_130 0.1820864558 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
9 Hb_002272_080 0.1838282917 - - -
10 Hb_001911_040 0.1841201112 - - PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
11 Hb_009393_180 0.1869364111 - - PREDICTED: uncharacterized protein LOC101292333 [Fragaria vesca subsp. vesca]
12 Hb_004880_140 0.1882968478 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 1 [Jatropha curcas]
13 Hb_118026_010 0.1930458405 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
14 Hb_000002_240 0.1936246443 - - PREDICTED: transcription factor bHLH104 [Jatropha curcas]
15 Hb_155599_010 0.1943935082 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
16 Hb_000503_010 0.1959886137 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b [Jatropha curcas]
17 Hb_007403_110 0.1974800687 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 4-like [Jatropha curcas]
18 Hb_014819_010 0.2020068889 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001377_360 0.2022334391 transcription factor TF Family: ARF PREDICTED: auxin response factor 18 [Jatropha curcas]
20 Hb_000282_030 0.2044476499 - - K(+) efflux antiporter 4 [Glycine soja]

Gene co-expression network

sample Hb_149714_010 Hb_149714_010 Hb_000086_340 Hb_000086_340 Hb_149714_010--Hb_000086_340 Hb_000475_040 Hb_000475_040 Hb_149714_010--Hb_000475_040 Hb_000122_050 Hb_000122_050 Hb_149714_010--Hb_000122_050 Hb_000302_260 Hb_000302_260 Hb_149714_010--Hb_000302_260 Hb_030116_010 Hb_030116_010 Hb_149714_010--Hb_030116_010 Hb_000264_290 Hb_000264_290 Hb_149714_010--Hb_000264_290 Hb_000086_340--Hb_000302_260 Hb_000086_340--Hb_000475_040 Hb_000086_340--Hb_000122_050 Hb_000086_340--Hb_030116_010 Hb_155599_010 Hb_155599_010 Hb_000086_340--Hb_155599_010 Hb_000475_040--Hb_000302_260 Hb_127194_010 Hb_127194_010 Hb_000475_040--Hb_127194_010 Hb_001123_200 Hb_001123_200 Hb_000475_040--Hb_001123_200 Hb_000210_010 Hb_000210_010 Hb_000475_040--Hb_000210_010 Hb_001911_040 Hb_001911_040 Hb_000122_050--Hb_001911_040 Hb_000122_050--Hb_000302_260 Hb_000302_130 Hb_000302_130 Hb_000122_050--Hb_000302_130 Hb_009545_090 Hb_009545_090 Hb_000122_050--Hb_009545_090 Hb_002042_130 Hb_002042_130 Hb_000302_260--Hb_002042_130 Hb_000402_210 Hb_000402_210 Hb_000302_260--Hb_000402_210 Hb_028487_020 Hb_028487_020 Hb_000302_260--Hb_028487_020 Hb_189208_020 Hb_189208_020 Hb_000302_260--Hb_189208_020 Hb_088753_010 Hb_088753_010 Hb_000302_260--Hb_088753_010 Hb_000672_030 Hb_000672_030 Hb_030116_010--Hb_000672_030 Hb_009393_180 Hb_009393_180 Hb_030116_010--Hb_009393_180 Hb_000134_340 Hb_000134_340 Hb_030116_010--Hb_000134_340 Hb_030116_010--Hb_009545_090 Hb_000363_370 Hb_000363_370 Hb_030116_010--Hb_000363_370 Hb_000608_280 Hb_000608_280 Hb_030116_010--Hb_000608_280 Hb_000264_290--Hb_000302_130 Hb_007123_060 Hb_007123_060 Hb_000264_290--Hb_007123_060 Hb_012120_030 Hb_012120_030 Hb_000264_290--Hb_012120_030 Hb_008667_040 Hb_008667_040 Hb_000264_290--Hb_008667_040 Hb_188209_010 Hb_188209_010 Hb_000264_290--Hb_188209_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.48961 14.9814 8.4675 6.67365 1.19166 8.68694
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.70001 10.9392 1.61189 2.59565 0.438025

CAGE analysis