Hb_188209_010

Information

Type -
Description -
Location Contig188209: 1103-1300
Sequence    

Annotation

kegg
ID pop:POPTR_0012s07860g
description hypothetical protein
nr
ID XP_012080126.1
description PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X2 [Jatropha curcas]
swissprot
ID Q3E870
description Succinate dehydrogenase subunit 7B, mitochondrial OS=Arabidopsis thaliana GN=SDH7B PE=1 SV=1
trembl
ID A0A068V8W9
description Coffea canephora DH200=94 genomic scaffold, scaffold_142 OS=Coffea canephora GN=GSCOC_T00011375001 PE=4 SV=1
Gene Ontology
ID GO:0005749
description subunit 7 of mitochondrial complex ii

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_188209_010 0.0 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X2 [Jatropha curcas]
2 Hb_000788_130 0.1511414181 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Jatropha curcas]
3 Hb_000789_070 0.1560584715 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000326_070 0.1595402972 - - phenylalanyl-tRNA synthetase beta chain, putative [Ricinus communis]
5 Hb_003371_180 0.1653474702 - - -
6 Hb_000175_090 0.1660631171 - - conserved hypothetical protein [Ricinus communis]
7 Hb_013405_060 0.1669930832 - - PREDICTED: probable RNA-binding protein 18 isoform X1 [Jatropha curcas]
8 Hb_000160_130 0.1693097061 - - PREDICTED: uncharacterized protein LOC105648215 [Jatropha curcas]
9 Hb_000710_010 0.1719520744 - - PREDICTED: uncharacterized protein LOC105630356 [Jatropha curcas]
10 Hb_012033_020 0.1722247111 - - -
11 Hb_000510_330 0.1734187628 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
12 Hb_005511_100 0.1742293316 - - PREDICTED: uncharacterized protein LOC105645493 isoform X1 [Jatropha curcas]
13 Hb_012120_030 0.1753576336 - - -
14 Hb_000264_290 0.1753689582 - - PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Jatropha curcas]
15 Hb_002820_110 0.1755297528 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
16 Hb_001135_020 0.1762527931 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
17 Hb_007441_210 0.1785944442 - - hypothetical protein PRUPE_ppa013350mg [Prunus persica]
18 Hb_000926_180 0.1786703213 - - proline synthetase associated protein, putative [Ricinus communis]
19 Hb_008112_040 0.1792323654 - - PREDICTED: uncharacterized protein LOC105637336 [Jatropha curcas]
20 Hb_012114_060 0.179531055 - - PREDICTED: uncharacterized protein LOC105645814 [Jatropha curcas]

Gene co-expression network

sample Hb_188209_010 Hb_188209_010 Hb_000788_130 Hb_000788_130 Hb_188209_010--Hb_000788_130 Hb_000789_070 Hb_000789_070 Hb_188209_010--Hb_000789_070 Hb_000326_070 Hb_000326_070 Hb_188209_010--Hb_000326_070 Hb_003371_180 Hb_003371_180 Hb_188209_010--Hb_003371_180 Hb_000175_090 Hb_000175_090 Hb_188209_010--Hb_000175_090 Hb_013405_060 Hb_013405_060 Hb_188209_010--Hb_013405_060 Hb_000788_130--Hb_003371_180 Hb_000788_130--Hb_000789_070 Hb_000160_130 Hb_000160_130 Hb_000788_130--Hb_000160_130 Hb_000788_130--Hb_013405_060 Hb_006018_040 Hb_006018_040 Hb_000788_130--Hb_006018_040 Hb_003001_110 Hb_003001_110 Hb_000789_070--Hb_003001_110 Hb_004785_190 Hb_004785_190 Hb_000789_070--Hb_004785_190 Hb_003747_220 Hb_003747_220 Hb_000789_070--Hb_003747_220 Hb_002296_050 Hb_002296_050 Hb_000789_070--Hb_002296_050 Hb_000422_030 Hb_000422_030 Hb_000789_070--Hb_000422_030 Hb_001534_050 Hb_001534_050 Hb_000789_070--Hb_001534_050 Hb_025236_040 Hb_025236_040 Hb_000326_070--Hb_025236_040 Hb_002374_170 Hb_002374_170 Hb_000326_070--Hb_002374_170 Hb_004297_070 Hb_004297_070 Hb_000326_070--Hb_004297_070 Hb_001951_260 Hb_001951_260 Hb_000326_070--Hb_001951_260 Hb_064264_010 Hb_064264_010 Hb_000326_070--Hb_064264_010 Hb_175215_010 Hb_175215_010 Hb_000326_070--Hb_175215_010 Hb_019249_010 Hb_019249_010 Hb_003371_180--Hb_019249_010 Hb_181288_010 Hb_181288_010 Hb_003371_180--Hb_181288_010 Hb_000465_040 Hb_000465_040 Hb_003371_180--Hb_000465_040 Hb_010407_040 Hb_010407_040 Hb_003371_180--Hb_010407_040 Hb_003371_180--Hb_013405_060 Hb_141532_010 Hb_141532_010 Hb_000175_090--Hb_141532_010 Hb_004363_010 Hb_004363_010 Hb_000175_090--Hb_004363_010 Hb_000976_260 Hb_000976_260 Hb_000175_090--Hb_000976_260 Hb_012114_060 Hb_012114_060 Hb_000175_090--Hb_012114_060 Hb_002292_010 Hb_002292_010 Hb_000175_090--Hb_002292_010 Hb_000261_250 Hb_000261_250 Hb_000175_090--Hb_000261_250 Hb_007441_210 Hb_007441_210 Hb_013405_060--Hb_007441_210 Hb_008112_040 Hb_008112_040 Hb_013405_060--Hb_008112_040 Hb_011381_060 Hb_011381_060 Hb_013405_060--Hb_011381_060 Hb_007154_020 Hb_007154_020 Hb_013405_060--Hb_007154_020 Hb_002868_010 Hb_002868_010 Hb_013405_060--Hb_002868_010 Hb_028841_030 Hb_028841_030 Hb_013405_060--Hb_028841_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5209.23 3470.51 4566.82 1307.29 2374.3 4184.61
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6041.34 5438.31 700.803 757.968 118.306

CAGE analysis