Hb_000789_070

Information

Type -
Description -
Location Contig789: 29264-30439
Sequence    

Annotation

kegg
ID rcu:RCOM_1049080
description hypothetical protein
nr
ID XP_002514205.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RKG1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1049080 PE=4 SV=1
Gene Ontology
ID GO:0050896
description oxidative stress isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58205: 29227-30491
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000789_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003001_110 0.1203518557 - - oleoyl-acyl carrier protein thioesterase 1, chloroplastic [Jatropha curcas]
3 Hb_004785_190 0.1223222707 - - PHD finger family protein [Populus trichocarpa]
4 Hb_003747_220 0.1268704382 - - PREDICTED: syntaxin-22-like isoform X2 [Jatropha curcas]
5 Hb_002296_050 0.1307776923 - - hypothetical protein AMTR_s00001p00247600 [Amborella trichopoda]
6 Hb_000422_030 0.1320272115 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
7 Hb_001534_050 0.1343416722 - - PREDICTED: uncharacterized protein LOC105642299 [Jatropha curcas]
8 Hb_002820_110 0.1352200486 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
9 Hb_007885_060 0.1363572065 - - replication factor C 40 kDa family protein [Populus trichocarpa]
10 Hb_000649_320 0.1375817201 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
11 Hb_019249_010 0.1375836869 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
12 Hb_000092_100 0.1415719637 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
13 Hb_002311_180 0.1434593412 - - drought-responsive family protein [Populus trichocarpa]
14 Hb_000186_190 0.144552344 - - PREDICTED: uncharacterized protein At4g22160 [Jatropha curcas]
15 Hb_013405_060 0.1449581849 - - PREDICTED: probable RNA-binding protein 18 isoform X1 [Jatropha curcas]
16 Hb_000926_180 0.1465602278 - - proline synthetase associated protein, putative [Ricinus communis]
17 Hb_003371_180 0.1483194245 - - -
18 Hb_002524_010 0.149875836 - - hypothetical protein POPTR_0006s20250g [Populus trichocarpa]
19 Hb_002234_100 0.1499955302 - - F-box family protein, putative isoform 1 [Theobroma cacao]
20 Hb_017002_020 0.1502365068 - - PREDICTED: uncharacterized protein LOC105650411 [Jatropha curcas]

Gene co-expression network

sample Hb_000789_070 Hb_000789_070 Hb_003001_110 Hb_003001_110 Hb_000789_070--Hb_003001_110 Hb_004785_190 Hb_004785_190 Hb_000789_070--Hb_004785_190 Hb_003747_220 Hb_003747_220 Hb_000789_070--Hb_003747_220 Hb_002296_050 Hb_002296_050 Hb_000789_070--Hb_002296_050 Hb_000422_030 Hb_000422_030 Hb_000789_070--Hb_000422_030 Hb_001534_050 Hb_001534_050 Hb_000789_070--Hb_001534_050 Hb_017002_020 Hb_017002_020 Hb_003001_110--Hb_017002_020 Hb_002028_140 Hb_002028_140 Hb_003001_110--Hb_002028_140 Hb_007885_060 Hb_007885_060 Hb_003001_110--Hb_007885_060 Hb_001998_120 Hb_001998_120 Hb_003001_110--Hb_001998_120 Hb_003001_110--Hb_004785_190 Hb_000926_310 Hb_000926_310 Hb_004785_190--Hb_000926_310 Hb_000610_010 Hb_000610_010 Hb_004785_190--Hb_000610_010 Hb_000661_140 Hb_000661_140 Hb_004785_190--Hb_000661_140 Hb_003687_230 Hb_003687_230 Hb_004785_190--Hb_003687_230 Hb_000009_530 Hb_000009_530 Hb_004785_190--Hb_000009_530 Hb_004785_190--Hb_002296_050 Hb_000252_150 Hb_000252_150 Hb_003747_220--Hb_000252_150 Hb_001143_130 Hb_001143_130 Hb_003747_220--Hb_001143_130 Hb_000635_180 Hb_000635_180 Hb_003747_220--Hb_000635_180 Hb_000462_130 Hb_000462_130 Hb_003747_220--Hb_000462_130 Hb_000179_070 Hb_000179_070 Hb_003747_220--Hb_000179_070 Hb_004586_140 Hb_004586_140 Hb_003747_220--Hb_004586_140 Hb_000107_190 Hb_000107_190 Hb_002296_050--Hb_000107_190 Hb_000220_040 Hb_000220_040 Hb_002296_050--Hb_000220_040 Hb_002296_050--Hb_000610_010 Hb_010068_040 Hb_010068_040 Hb_002296_050--Hb_010068_040 Hb_021576_040 Hb_021576_040 Hb_002296_050--Hb_021576_040 Hb_002296_050--Hb_000009_530 Hb_000649_230 Hb_000649_230 Hb_000422_030--Hb_000649_230 Hb_001269_640 Hb_001269_640 Hb_000422_030--Hb_001269_640 Hb_000690_190 Hb_000690_190 Hb_000422_030--Hb_000690_190 Hb_156635_010 Hb_156635_010 Hb_000422_030--Hb_156635_010 Hb_010315_060 Hb_010315_060 Hb_000422_030--Hb_010315_060 Hb_022132_050 Hb_022132_050 Hb_000422_030--Hb_022132_050 Hb_001534_050--Hb_000462_130 Hb_003125_200 Hb_003125_200 Hb_001534_050--Hb_003125_200 Hb_028995_040 Hb_028995_040 Hb_001534_050--Hb_028995_040 Hb_004491_010 Hb_004491_010 Hb_001534_050--Hb_004491_010 Hb_000771_120 Hb_000771_120 Hb_001534_050--Hb_000771_120 Hb_003078_040 Hb_003078_040 Hb_001534_050--Hb_003078_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.9233 38.9041 46.5162 22.4775 29.902 49.3283
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
67.8518 49.4451 18.9462 8.02164 9.93559

CAGE analysis