Hb_000788_130

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig788: 129999-132723
Sequence    

Annotation

kegg
ID egr:104454821
description disease resistance protein At4g27190-like
nr
ID XP_012066788.1
description PREDICTED: disease resistance protein At4g27190-like [Jatropha curcas]
swissprot
ID Q9SSR8
description Probable disease resistance protein At1g52660 OS=Arabidopsis thaliana GN=At1g52660 PE=3 SV=1
trembl
ID A0A067L1X3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00273 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58185: 130296-130900
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000788_130 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Jatropha curcas]
2 Hb_003371_180 0.1243167396 - - -
3 Hb_188209_010 0.1511414181 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X2 [Jatropha curcas]
4 Hb_000789_070 0.1536222505 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000160_130 0.1664068754 - - PREDICTED: uncharacterized protein LOC105648215 [Jatropha curcas]
6 Hb_013405_060 0.1725792807 - - PREDICTED: probable RNA-binding protein 18 isoform X1 [Jatropha curcas]
7 Hb_006018_040 0.1761889187 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
8 Hb_017469_020 0.1825395641 - - -
9 Hb_019249_010 0.1833515743 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
10 Hb_000649_320 0.1841180322 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
11 Hb_010106_010 0.1883380955 - - PREDICTED: cucumisin-like [Populus euphratica]
12 Hb_077354_010 0.1897963154 - - PREDICTED: uncharacterized protein LOC105637567 [Jatropha curcas]
13 Hb_000710_010 0.1911825259 - - PREDICTED: uncharacterized protein LOC105630356 [Jatropha curcas]
14 Hb_007778_030 0.192478412 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
15 Hb_000395_290 0.1937009365 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-8 [Jatropha curcas]
16 Hb_000438_170 0.1937505912 - - -
17 Hb_145880_030 0.1951216739 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
18 Hb_000926_180 0.1951764526 - - proline synthetase associated protein, putative [Ricinus communis]
19 Hb_028347_010 0.1956325533 - - -
20 Hb_002045_040 0.197439612 - - PREDICTED: protein OSB2, chloroplastic-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000788_130 Hb_000788_130 Hb_003371_180 Hb_003371_180 Hb_000788_130--Hb_003371_180 Hb_188209_010 Hb_188209_010 Hb_000788_130--Hb_188209_010 Hb_000789_070 Hb_000789_070 Hb_000788_130--Hb_000789_070 Hb_000160_130 Hb_000160_130 Hb_000788_130--Hb_000160_130 Hb_013405_060 Hb_013405_060 Hb_000788_130--Hb_013405_060 Hb_006018_040 Hb_006018_040 Hb_000788_130--Hb_006018_040 Hb_019249_010 Hb_019249_010 Hb_003371_180--Hb_019249_010 Hb_181288_010 Hb_181288_010 Hb_003371_180--Hb_181288_010 Hb_000465_040 Hb_000465_040 Hb_003371_180--Hb_000465_040 Hb_010407_040 Hb_010407_040 Hb_003371_180--Hb_010407_040 Hb_003371_180--Hb_013405_060 Hb_188209_010--Hb_000789_070 Hb_000326_070 Hb_000326_070 Hb_188209_010--Hb_000326_070 Hb_188209_010--Hb_003371_180 Hb_000175_090 Hb_000175_090 Hb_188209_010--Hb_000175_090 Hb_188209_010--Hb_013405_060 Hb_003001_110 Hb_003001_110 Hb_000789_070--Hb_003001_110 Hb_004785_190 Hb_004785_190 Hb_000789_070--Hb_004785_190 Hb_003747_220 Hb_003747_220 Hb_000789_070--Hb_003747_220 Hb_002296_050 Hb_002296_050 Hb_000789_070--Hb_002296_050 Hb_000422_030 Hb_000422_030 Hb_000789_070--Hb_000422_030 Hb_001534_050 Hb_001534_050 Hb_000789_070--Hb_001534_050 Hb_007778_030 Hb_007778_030 Hb_000160_130--Hb_007778_030 Hb_000160_130--Hb_010407_040 Hb_003018_120 Hb_003018_120 Hb_000160_130--Hb_003018_120 Hb_145880_030 Hb_145880_030 Hb_000160_130--Hb_145880_030 Hb_023226_040 Hb_023226_040 Hb_000160_130--Hb_023226_040 Hb_000163_160 Hb_000163_160 Hb_000160_130--Hb_000163_160 Hb_007441_210 Hb_007441_210 Hb_013405_060--Hb_007441_210 Hb_008112_040 Hb_008112_040 Hb_013405_060--Hb_008112_040 Hb_011381_060 Hb_011381_060 Hb_013405_060--Hb_011381_060 Hb_007154_020 Hb_007154_020 Hb_013405_060--Hb_007154_020 Hb_002868_010 Hb_002868_010 Hb_013405_060--Hb_002868_010 Hb_028841_030 Hb_028841_030 Hb_013405_060--Hb_028841_030 Hb_000649_320 Hb_000649_320 Hb_006018_040--Hb_000649_320 Hb_000635_180 Hb_000635_180 Hb_006018_040--Hb_000635_180 Hb_005653_060 Hb_005653_060 Hb_006018_040--Hb_005653_060 Hb_003185_080 Hb_003185_080 Hb_006018_040--Hb_003185_080 Hb_000120_330 Hb_000120_330 Hb_006018_040--Hb_000120_330 Hb_001143_130 Hb_001143_130 Hb_006018_040--Hb_001143_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.29549 4.44426 4.61437 2.01689 2.76169 4.89807
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0021 7.88345 1.17099 0.0862079 1.60511

CAGE analysis