Hb_000326_070

Information

Type -
Description -
Location Contig326: 77140-80071
Sequence    

Annotation

kegg
ID rcu:RCOM_1675140
description phenylalanyl-tRNA synthetase beta chain, putative
nr
ID XP_002509487.1
description phenylalanyl-tRNA synthetase beta chain, putative [Ricinus communis]
swissprot
ID Q9T034
description Probable phenylalanine--tRNA ligase alpha subunit OS=Arabidopsis thaliana GN=At4g39280 PE=2 SV=3
trembl
ID B9RBF3
description Phenylalanyl-tRNA synthetase beta chain, putative OS=Ricinus communis GN=RCOM_1675140 PE=3 SV=1
Gene Ontology
ID GO:0005737
description probable phenylalanine--trna ligase alpha subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34301: 78917-80024
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000326_070 0.0 - - phenylalanyl-tRNA synthetase beta chain, putative [Ricinus communis]
2 Hb_025236_040 0.1247328271 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002374_170 0.131243449 - - 20S proteasome beta subunit C1 [Hevea brasiliensis]
4 Hb_004297_070 0.1317398327 - - hypothetical protein POPTR_0009s14820g [Populus trichocarpa]
5 Hb_001951_260 0.1345483185 - - 60S ribosomal protein L32, putative [Ricinus communis]
6 Hb_064264_010 0.1398457531 - - hypothetical protein [Zea mays]
7 Hb_175215_010 0.1402134736 - - hypothetical protein CISIN_1g029605mg [Citrus sinensis]
8 Hb_002820_110 0.1417006771 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
9 Hb_009486_150 0.1418344981 - - 60S ribosomal protein L37a-2 [Medicago truncatula]
10 Hb_010407_040 0.1432878693 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Nelumbo nucifera]
11 Hb_001221_320 0.1461591676 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
12 Hb_000442_090 0.1465177317 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Jatropha curcas]
13 Hb_007441_210 0.1466086754 - - hypothetical protein PRUPE_ppa013350mg [Prunus persica]
14 Hb_004897_020 0.1493765209 - - PREDICTED: (-)-germacrene D synthase-like [Populus euphratica]
15 Hb_002811_260 0.1504577715 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
16 Hb_007558_010 0.1504610303 - - PREDICTED: mitochondrial import receptor subunit TOM9-2 [Jatropha curcas]
17 Hb_000065_080 0.1505962575 - - PREDICTED: omega-6 fatty acid desaturase, chloroplastic-like [Nelumbo nucifera]
18 Hb_003363_110 0.1509084826 - - protein with unknown function [Ricinus communis]
19 Hb_000163_160 0.1512419173 - - Putative small nuclear ribonucleoprotein Sm D2 [Glycine soja]
20 Hb_005773_060 0.1516448925 - - defender against cell death, putative [Ricinus communis]

Gene co-expression network

sample Hb_000326_070 Hb_000326_070 Hb_025236_040 Hb_025236_040 Hb_000326_070--Hb_025236_040 Hb_002374_170 Hb_002374_170 Hb_000326_070--Hb_002374_170 Hb_004297_070 Hb_004297_070 Hb_000326_070--Hb_004297_070 Hb_001951_260 Hb_001951_260 Hb_000326_070--Hb_001951_260 Hb_064264_010 Hb_064264_010 Hb_000326_070--Hb_064264_010 Hb_175215_010 Hb_175215_010 Hb_000326_070--Hb_175215_010 Hb_025236_040--Hb_001951_260 Hb_017259_010 Hb_017259_010 Hb_025236_040--Hb_017259_010 Hb_000084_290 Hb_000084_290 Hb_025236_040--Hb_000084_290 Hb_000621_060 Hb_000621_060 Hb_025236_040--Hb_000621_060 Hb_003746_040 Hb_003746_040 Hb_025236_040--Hb_003746_040 Hb_000290_020 Hb_000290_020 Hb_025236_040--Hb_000290_020 Hb_011381_060 Hb_011381_060 Hb_002374_170--Hb_011381_060 Hb_001459_080 Hb_001459_080 Hb_002374_170--Hb_001459_080 Hb_004787_060 Hb_004787_060 Hb_002374_170--Hb_004787_060 Hb_168878_010 Hb_168878_010 Hb_002374_170--Hb_168878_010 Hb_002811_260 Hb_002811_260 Hb_002374_170--Hb_002811_260 Hb_028841_030 Hb_028841_030 Hb_002374_170--Hb_028841_030 Hb_001377_150 Hb_001377_150 Hb_004297_070--Hb_001377_150 Hb_001278_110 Hb_001278_110 Hb_004297_070--Hb_001278_110 Hb_181288_010 Hb_181288_010 Hb_004297_070--Hb_181288_010 Hb_003266_050 Hb_003266_050 Hb_004297_070--Hb_003266_050 Hb_070986_010 Hb_070986_010 Hb_004297_070--Hb_070986_010 Hb_003874_020 Hb_003874_020 Hb_004297_070--Hb_003874_020 Hb_001951_260--Hb_000290_020 Hb_004032_060 Hb_004032_060 Hb_001951_260--Hb_004032_060 Hb_001951_260--Hb_000084_290 Hb_007558_010 Hb_007558_010 Hb_001951_260--Hb_007558_010 Hb_001047_100 Hb_001047_100 Hb_001951_260--Hb_001047_100 Hb_046049_010 Hb_046049_010 Hb_064264_010--Hb_046049_010 Hb_000101_270 Hb_000101_270 Hb_064264_010--Hb_000101_270 Hb_042083_050 Hb_042083_050 Hb_064264_010--Hb_042083_050 Hb_002868_010 Hb_002868_010 Hb_064264_010--Hb_002868_010 Hb_001946_210 Hb_001946_210 Hb_064264_010--Hb_001946_210 Hb_064264_010--Hb_175215_010 Hb_128048_010 Hb_128048_010 Hb_175215_010--Hb_128048_010 Hb_009486_150 Hb_009486_150 Hb_175215_010--Hb_009486_150 Hb_001504_020 Hb_001504_020 Hb_175215_010--Hb_001504_020 Hb_175215_010--Hb_004787_060 Hb_021419_020 Hb_021419_020 Hb_175215_010--Hb_021419_020 Hb_000926_300 Hb_000926_300 Hb_175215_010--Hb_000926_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.47147 1.08516 3.9323 2.04036 3.23343 4.57504
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.62859 6.46084 0.553725 1.89236 0.409759

CAGE analysis