Hb_168878_010

Information

Type -
Description -
Location Contig168878: 4071-4872
Sequence    

Annotation

kegg
ID tcc:TCM_029566
description Ribosomal protein L32e isoform 1
nr
ID ADR71279.1
description 60S ribosomal protein L32A [Hevea brasiliensis]
swissprot
ID P49211
description 60S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A PE=2 SV=2
trembl
ID I3NMP3
description 60S ribosomal protein L32A OS=Hevea brasiliensis GN=RPL32B PE=2 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l32-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15640: 4138-4723
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_168878_010 0.0 - - 60S ribosomal protein L32A [Hevea brasiliensis]
2 Hb_001459_080 0.0461934056 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
3 Hb_002374_170 0.0815947204 - - 20S proteasome beta subunit C1 [Hevea brasiliensis]
4 Hb_004787_060 0.09426213 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
5 Hb_000025_230 0.09566153 - - PREDICTED: 10 kDa chaperonin [Vitis vinifera]
6 Hb_001143_220 0.098243469 - - 20S proteasome beta subunit C2 [Hevea brasiliensis]
7 Hb_008112_040 0.1060739487 - - PREDICTED: uncharacterized protein LOC105637336 [Jatropha curcas]
8 Hb_000286_070 0.107577923 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
9 Hb_000260_550 0.1096718577 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
10 Hb_011381_060 0.1161582489 - - PREDICTED: ADP-ribosylation factor 3 [Jatropha curcas]
11 Hb_001754_250 0.1185534574 - - PREDICTED: uncharacterized protein LOC105643411 [Jatropha curcas]
12 Hb_005322_040 0.118923742 - - 60S ribosomal protein L9, putative [Ricinus communis]
13 Hb_047823_010 0.1194949059 - - hypothetical protein CARUB_v10024013mg [Capsella rubella]
14 Hb_001545_040 0.1216307504 - - PREDICTED: ras-related protein Rab7-like [Malus domestica]
15 Hb_000395_290 0.1218629707 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-8 [Jatropha curcas]
16 Hb_003185_110 0.1230468147 - - PREDICTED: cytochrome b-c1 complex subunit 7-2 [Nelumbo nucifera]
17 Hb_000694_040 0.124102768 - - Uncharacterized protein isoform 1 [Theobroma cacao]
18 Hb_021419_020 0.1247971975 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
19 Hb_028841_030 0.124832743 - - -
20 Hb_009486_150 0.124888141 - - 60S ribosomal protein L37a-2 [Medicago truncatula]

Gene co-expression network

sample Hb_168878_010 Hb_168878_010 Hb_001459_080 Hb_001459_080 Hb_168878_010--Hb_001459_080 Hb_002374_170 Hb_002374_170 Hb_168878_010--Hb_002374_170 Hb_004787_060 Hb_004787_060 Hb_168878_010--Hb_004787_060 Hb_000025_230 Hb_000025_230 Hb_168878_010--Hb_000025_230 Hb_001143_220 Hb_001143_220 Hb_168878_010--Hb_001143_220 Hb_008112_040 Hb_008112_040 Hb_168878_010--Hb_008112_040 Hb_001459_080--Hb_002374_170 Hb_001459_080--Hb_004787_060 Hb_001459_080--Hb_000025_230 Hb_000260_550 Hb_000260_550 Hb_001459_080--Hb_000260_550 Hb_028841_030 Hb_028841_030 Hb_001459_080--Hb_028841_030 Hb_011381_060 Hb_011381_060 Hb_002374_170--Hb_011381_060 Hb_002374_170--Hb_004787_060 Hb_002811_260 Hb_002811_260 Hb_002374_170--Hb_002811_260 Hb_002374_170--Hb_028841_030 Hb_005322_040 Hb_005322_040 Hb_004787_060--Hb_005322_040 Hb_001329_290 Hb_001329_290 Hb_004787_060--Hb_001329_290 Hb_000286_070 Hb_000286_070 Hb_004787_060--Hb_000286_070 Hb_021419_020 Hb_021419_020 Hb_004787_060--Hb_021419_020 Hb_004449_170 Hb_004449_170 Hb_004787_060--Hb_004449_170 Hb_010921_010 Hb_010921_010 Hb_004787_060--Hb_010921_010 Hb_003607_150 Hb_003607_150 Hb_000025_230--Hb_003607_150 Hb_000025_230--Hb_008112_040 Hb_000025_230--Hb_002374_170 Hb_000025_230--Hb_011381_060 Hb_001143_220--Hb_000260_550 Hb_001143_220--Hb_001459_080 Hb_007044_130 Hb_007044_130 Hb_001143_220--Hb_007044_130 Hb_002783_270 Hb_002783_270 Hb_001143_220--Hb_002783_270 Hb_001754_250 Hb_001754_250 Hb_001143_220--Hb_001754_250 Hb_007154_020 Hb_007154_020 Hb_008112_040--Hb_007154_020 Hb_013405_060 Hb_013405_060 Hb_008112_040--Hb_013405_060 Hb_004363_010 Hb_004363_010 Hb_008112_040--Hb_004363_010 Hb_008112_040--Hb_028841_030 Hb_003687_230 Hb_003687_230 Hb_008112_040--Hb_003687_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
147.098 68.0134 169.887 41.0647 125.2 75.4451
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
137.316 310.761 60.5211 61.0386 20.3868

CAGE analysis