Hb_003371_180

Information

Type -
Description -
Location Contig3371: 107589-109606
Sequence    

Annotation

kegg
ID rcu:RCOM_0474890
description hypothetical protein
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35297: 102981-108291
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003371_180 0.0 - - -
2 Hb_019249_010 0.1124096874 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
3 Hb_000788_130 0.1243167396 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Jatropha curcas]
4 Hb_181288_010 0.135546503 - - rac-GTP binding protein, putative [Ricinus communis]
5 Hb_000465_040 0.1357434119 - - PREDICTED: uncharacterized protein LOC103433005 isoform X1 [Malus domestica]
6 Hb_010407_040 0.1369495302 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Nelumbo nucifera]
7 Hb_013405_060 0.1372988141 - - PREDICTED: probable RNA-binding protein 18 isoform X1 [Jatropha curcas]
8 Hb_145880_030 0.138488818 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
9 Hb_000714_030 0.1386943457 - - Nucleosome assembly [Gossypium arboreum]
10 Hb_000084_290 0.1401751345 - - mitochondrial 39S ribosomal protein L53 [Hevea brasiliensis]
11 Hb_000065_080 0.1413279281 - - PREDICTED: omega-6 fatty acid desaturase, chloroplastic-like [Nelumbo nucifera]
12 Hb_028347_010 0.1429900133 - - -
13 Hb_000160_130 0.1432854976 - - PREDICTED: uncharacterized protein LOC105648215 [Jatropha curcas]
14 Hb_025236_040 0.1450694597 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000723_090 0.1456766755 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002045_040 0.1464490064 - - PREDICTED: protein OSB2, chloroplastic-like isoform X1 [Jatropha curcas]
17 Hb_033594_110 0.1466624192 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
18 Hb_011381_060 0.1478166765 - - PREDICTED: ADP-ribosylation factor 3 [Jatropha curcas]
19 Hb_007441_210 0.1478305258 - - hypothetical protein PRUPE_ppa013350mg [Prunus persica]
20 Hb_000000_160 0.1479356686 - - PREDICTED: membrin-11 [Jatropha curcas]

Gene co-expression network

sample Hb_003371_180 Hb_003371_180 Hb_019249_010 Hb_019249_010 Hb_003371_180--Hb_019249_010 Hb_000788_130 Hb_000788_130 Hb_003371_180--Hb_000788_130 Hb_181288_010 Hb_181288_010 Hb_003371_180--Hb_181288_010 Hb_000465_040 Hb_000465_040 Hb_003371_180--Hb_000465_040 Hb_010407_040 Hb_010407_040 Hb_003371_180--Hb_010407_040 Hb_013405_060 Hb_013405_060 Hb_003371_180--Hb_013405_060 Hb_019249_010--Hb_181288_010 Hb_128048_010 Hb_128048_010 Hb_019249_010--Hb_128048_010 Hb_002289_120 Hb_002289_120 Hb_019249_010--Hb_002289_120 Hb_001814_070 Hb_001814_070 Hb_019249_010--Hb_001814_070 Hb_001817_090 Hb_001817_090 Hb_019249_010--Hb_001817_090 Hb_003878_010 Hb_003878_010 Hb_019249_010--Hb_003878_010 Hb_188209_010 Hb_188209_010 Hb_000788_130--Hb_188209_010 Hb_000789_070 Hb_000789_070 Hb_000788_130--Hb_000789_070 Hb_000160_130 Hb_000160_130 Hb_000788_130--Hb_000160_130 Hb_000788_130--Hb_013405_060 Hb_006018_040 Hb_006018_040 Hb_000788_130--Hb_006018_040 Hb_181288_010--Hb_128048_010 Hb_004204_120 Hb_004204_120 Hb_181288_010--Hb_004204_120 Hb_033594_110 Hb_033594_110 Hb_181288_010--Hb_033594_110 Hb_002518_050 Hb_002518_050 Hb_181288_010--Hb_002518_050 Hb_002105_090 Hb_002105_090 Hb_181288_010--Hb_002105_090 Hb_000457_110 Hb_000457_110 Hb_000465_040--Hb_000457_110 Hb_000723_090 Hb_000723_090 Hb_000465_040--Hb_000723_090 Hb_116420_030 Hb_116420_030 Hb_000465_040--Hb_116420_030 Hb_000465_040--Hb_002105_090 Hb_000714_030 Hb_000714_030 Hb_000465_040--Hb_000714_030 Hb_000084_290 Hb_000084_290 Hb_000465_040--Hb_000084_290 Hb_000494_020 Hb_000494_020 Hb_010407_040--Hb_000494_020 Hb_000163_160 Hb_000163_160 Hb_010407_040--Hb_000163_160 Hb_145880_030 Hb_145880_030 Hb_010407_040--Hb_145880_030 Hb_003363_110 Hb_003363_110 Hb_010407_040--Hb_003363_110 Hb_007778_030 Hb_007778_030 Hb_010407_040--Hb_007778_030 Hb_000000_160 Hb_000000_160 Hb_010407_040--Hb_000000_160 Hb_007441_210 Hb_007441_210 Hb_013405_060--Hb_007441_210 Hb_008112_040 Hb_008112_040 Hb_013405_060--Hb_008112_040 Hb_011381_060 Hb_011381_060 Hb_013405_060--Hb_011381_060 Hb_007154_020 Hb_007154_020 Hb_013405_060--Hb_007154_020 Hb_002868_010 Hb_002868_010 Hb_013405_060--Hb_002868_010 Hb_028841_030 Hb_028841_030 Hb_013405_060--Hb_028841_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.92364 1.30827 1.9449 1.61688 2.62065 2.82857
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.8561 4.27467 0.67007 0.218794 0.593337

CAGE analysis