Hb_009393_180

Information

Type -
Description -
Location Contig9393: 137889-139541
Sequence    

Annotation

kegg
ID fve:101292333
description uncharacterized protein LOC101292333
nr
ID XP_004305978.1
description PREDICTED: uncharacterized protein LOC101292333 [Fragaria vesca subsp. vesca]
swissprot
ID -
description -
trembl
ID A0A0D3CV36
description Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009393_180 0.0 - - PREDICTED: uncharacterized protein LOC101292333 [Fragaria vesca subsp. vesca]
2 Hb_030116_010 0.1228447453 - - F-box protein, atfbl3, putative [Ricinus communis]
3 Hb_004917_040 0.137358886 - - hypothetical protein POPTR_0009s03470g [Populus trichocarpa]
4 Hb_075230_010 0.14327412 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Glycine max]
5 Hb_155599_010 0.1433050812 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
6 Hb_000211_120 0.1463673487 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
7 Hb_046117_010 0.1581095052 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 3 [Jatropha curcas]
8 Hb_003411_110 0.1590451192 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
9 Hb_001484_100 0.161676427 - - PREDICTED: cyanate hydratase [Jatropha curcas]
10 Hb_000363_280 0.1626668407 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: angiomotin [Cucumis sativus]
11 Hb_000672_030 0.168004775 - - PREDICTED: uncharacterized protein LOC105628931 isoform X1 [Jatropha curcas]
12 Hb_001638_030 0.1697849912 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
13 Hb_000061_490 0.1703790581 - - hypothetical protein CISIN_1g0362002mg, partial [Citrus sinensis]
14 Hb_003506_070 0.1705137303 - - PREDICTED: calcineurin B-like protein 7 isoform X2 [Jatropha curcas]
15 Hb_014819_010 0.1707403216 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006198_020 0.1707644868 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]
17 Hb_006711_070 0.1713122056 - - hypothetical protein RCOM_1336320 [Ricinus communis]
18 Hb_001225_030 0.1718650152 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 1 [Jatropha curcas]
19 Hb_005015_080 0.1728724499 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
20 Hb_006538_130 0.173774449 - - Uncharacterized protein TCM_009867 [Theobroma cacao]

Gene co-expression network

sample Hb_009393_180 Hb_009393_180 Hb_030116_010 Hb_030116_010 Hb_009393_180--Hb_030116_010 Hb_004917_040 Hb_004917_040 Hb_009393_180--Hb_004917_040 Hb_075230_010 Hb_075230_010 Hb_009393_180--Hb_075230_010 Hb_155599_010 Hb_155599_010 Hb_009393_180--Hb_155599_010 Hb_000211_120 Hb_000211_120 Hb_009393_180--Hb_000211_120 Hb_046117_010 Hb_046117_010 Hb_009393_180--Hb_046117_010 Hb_000672_030 Hb_000672_030 Hb_030116_010--Hb_000672_030 Hb_000134_340 Hb_000134_340 Hb_030116_010--Hb_000134_340 Hb_009545_090 Hb_009545_090 Hb_030116_010--Hb_009545_090 Hb_000363_370 Hb_000363_370 Hb_030116_010--Hb_000363_370 Hb_000608_280 Hb_000608_280 Hb_030116_010--Hb_000608_280 Hb_002248_130 Hb_002248_130 Hb_004917_040--Hb_002248_130 Hb_004917_040--Hb_000608_280 Hb_003540_250 Hb_003540_250 Hb_004917_040--Hb_003540_250 Hb_021443_090 Hb_021443_090 Hb_004917_040--Hb_021443_090 Hb_005015_080 Hb_005015_080 Hb_004917_040--Hb_005015_080 Hb_001376_010 Hb_001376_010 Hb_004917_040--Hb_001376_010 Hb_001484_100 Hb_001484_100 Hb_075230_010--Hb_001484_100 Hb_012634_020 Hb_012634_020 Hb_075230_010--Hb_012634_020 Hb_001277_190 Hb_001277_190 Hb_075230_010--Hb_001277_190 Hb_027402_040 Hb_027402_040 Hb_075230_010--Hb_027402_040 Hb_078568_010 Hb_078568_010 Hb_075230_010--Hb_078568_010 Hb_001766_020 Hb_001766_020 Hb_155599_010--Hb_001766_020 Hb_000019_050 Hb_000019_050 Hb_155599_010--Hb_000019_050 Hb_003411_110 Hb_003411_110 Hb_155599_010--Hb_003411_110 Hb_000832_030 Hb_000832_030 Hb_155599_010--Hb_000832_030 Hb_000084_030 Hb_000084_030 Hb_155599_010--Hb_000084_030 Hb_000336_110 Hb_000336_110 Hb_000211_120--Hb_000336_110 Hb_000264_080 Hb_000264_080 Hb_000211_120--Hb_000264_080 Hb_005355_030 Hb_005355_030 Hb_000211_120--Hb_005355_030 Hb_000282_030 Hb_000282_030 Hb_000211_120--Hb_000282_030 Hb_185516_010 Hb_185516_010 Hb_000211_120--Hb_185516_010 Hb_000061_490 Hb_000061_490 Hb_000211_120--Hb_000061_490 Hb_000465_080 Hb_000465_080 Hb_046117_010--Hb_000465_080 Hb_009771_100 Hb_009771_100 Hb_046117_010--Hb_009771_100 Hb_012226_010 Hb_012226_010 Hb_046117_010--Hb_012226_010 Hb_000540_120 Hb_000540_120 Hb_046117_010--Hb_000540_120 Hb_003125_030 Hb_003125_030 Hb_046117_010--Hb_003125_030 Hb_046117_010--Hb_000061_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.08291 5.27641 2.61451 2.12802 0.558095 2.27288
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.49954 1.4135 0.590064 0.591634 0.867128

CAGE analysis