Hb_001277_190

Information

Type -
Description -
Location Contig1277: 154972-155877
Sequence    

Annotation

kegg
ID cic:CICLE_v10005534mg
description hypothetical protein
nr
ID XP_006420054.1
description hypothetical protein CICLE_v10005534mg [Citrus clementina]
swissprot
ID P9WPT5
description Probable manganese/zinc-exporting P-type ATPase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=ctpC PE=1 SV=1
trembl
ID V4U243
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005534mg PE=4 SV=1
Gene Ontology
ID GO:0016021
description calcium-transporting atpase plasma membrane-type

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001277_190 0.0 - - hypothetical protein CICLE_v10005534mg [Citrus clementina]
2 Hb_075230_010 0.1812681048 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Glycine max]
3 Hb_095575_010 0.2193516126 - - hypothetical protein JCGZ_19529 [Jatropha curcas]
4 Hb_002196_010 0.2199388087 - - PREDICTED: LOW QUALITY PROTEIN: proline-rich receptor-like protein kinase PERK1 [Jatropha curcas]
5 Hb_127404_010 0.2202139458 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X1 [Gossypium raimondii]
6 Hb_003913_030 0.226449118 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
7 Hb_012634_020 0.228974857 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Jatropha curcas]
8 Hb_000987_130 0.2308782774 - - -
9 Hb_006711_070 0.2359424209 - - hypothetical protein RCOM_1336320 [Ricinus communis]
10 Hb_005000_300 0.2393276577 transcription factor TF Family: TRAF putative regulatory protein NPR1 [Hevea brasiliensis]
11 Hb_001277_160 0.2413507385 - - hypothetical protein MIMGU_mgv1a019742mg, partial [Erythranthe guttata]
12 Hb_009393_180 0.2431893451 - - PREDICTED: uncharacterized protein LOC101292333 [Fragaria vesca subsp. vesca]
13 Hb_002326_070 0.2447851806 - - ent-kaurene oxidase, chloroplastic [Jatropha curcas]
14 Hb_000117_060 0.2461526452 - - PREDICTED: uncharacterized protein LOC103949199 [Pyrus x bretschneideri]
15 Hb_027402_040 0.2473410349 - - Thioredoxin II, putative [Ricinus communis]
16 Hb_001711_010 0.2474782681 - - -
17 Hb_076038_010 0.2484718576 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003835_090 0.2516042909 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 [Jatropha curcas]
19 Hb_005464_030 0.2519044278 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_002701_210 0.2534587064 - - Protein COBRA precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001277_190 Hb_001277_190 Hb_075230_010 Hb_075230_010 Hb_001277_190--Hb_075230_010 Hb_095575_010 Hb_095575_010 Hb_001277_190--Hb_095575_010 Hb_002196_010 Hb_002196_010 Hb_001277_190--Hb_002196_010 Hb_127404_010 Hb_127404_010 Hb_001277_190--Hb_127404_010 Hb_003913_030 Hb_003913_030 Hb_001277_190--Hb_003913_030 Hb_012634_020 Hb_012634_020 Hb_001277_190--Hb_012634_020 Hb_009393_180 Hb_009393_180 Hb_075230_010--Hb_009393_180 Hb_001484_100 Hb_001484_100 Hb_075230_010--Hb_001484_100 Hb_075230_010--Hb_012634_020 Hb_027402_040 Hb_027402_040 Hb_075230_010--Hb_027402_040 Hb_078568_010 Hb_078568_010 Hb_075230_010--Hb_078568_010 Hb_033327_010 Hb_033327_010 Hb_095575_010--Hb_033327_010 Hb_000926_110 Hb_000926_110 Hb_095575_010--Hb_000926_110 Hb_000594_110 Hb_000594_110 Hb_095575_010--Hb_000594_110 Hb_095575_010--Hb_003913_030 Hb_000836_160 Hb_000836_160 Hb_095575_010--Hb_000836_160 Hb_186589_010 Hb_186589_010 Hb_095575_010--Hb_186589_010 Hb_001622_010 Hb_001622_010 Hb_002196_010--Hb_001622_010 Hb_005464_030 Hb_005464_030 Hb_002196_010--Hb_005464_030 Hb_006420_020 Hb_006420_020 Hb_002196_010--Hb_006420_020 Hb_080147_080 Hb_080147_080 Hb_002196_010--Hb_080147_080 Hb_001865_040 Hb_001865_040 Hb_002196_010--Hb_001865_040 Hb_009393_200 Hb_009393_200 Hb_002196_010--Hb_009393_200 Hb_022534_010 Hb_022534_010 Hb_127404_010--Hb_022534_010 Hb_127404_010--Hb_075230_010 Hb_127404_010--Hb_003913_030 Hb_012258_020 Hb_012258_020 Hb_127404_010--Hb_012258_020 Hb_000117_060 Hb_000117_060 Hb_127404_010--Hb_000117_060 Hb_003531_040 Hb_003531_040 Hb_003913_030--Hb_003531_040 Hb_000220_090 Hb_000220_090 Hb_003913_030--Hb_000220_090 Hb_006916_200 Hb_006916_200 Hb_003913_030--Hb_006916_200 Hb_003913_030--Hb_000117_060 Hb_056012_010 Hb_056012_010 Hb_003913_030--Hb_056012_010 Hb_003637_020 Hb_003637_020 Hb_003913_030--Hb_003637_020 Hb_002685_200 Hb_002685_200 Hb_012634_020--Hb_002685_200 Hb_000084_240 Hb_000084_240 Hb_012634_020--Hb_000084_240 Hb_000445_100 Hb_000445_100 Hb_012634_020--Hb_000445_100 Hb_002701_210 Hb_002701_210 Hb_012634_020--Hb_002701_210 Hb_001638_030 Hb_001638_030 Hb_012634_020--Hb_001638_030 Hb_003224_030 Hb_003224_030 Hb_012634_020--Hb_003224_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.43632 8.76013 3.38074 3.27198 0.562538 0.864889
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.03312 0.902737 0.330007 0.272979 0

CAGE analysis