Hb_127404_010

Information

Type -
Description -
Location Contig127404: 644-2119
Sequence    

Annotation

kegg
ID tcc:TCM_030368
description E3 ubiquitin-protein ligase UPL5
nr
ID XP_012448557.1
description PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X1 [Gossypium raimondii]
swissprot
ID Q9SU29
description E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=1 SV=1
trembl
ID A0A0D2UH00
description Gossypium raimondii chromosome 10, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_010G186800 PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin-protein ligase upl5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08366: 718-1186
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_127404_010 0.0 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X1 [Gossypium raimondii]
2 Hb_022534_010 0.1775238109 - - hypothetical protein CICLE_v10000066mg [Citrus clementina]
3 Hb_075230_010 0.1984395253 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Glycine max]
4 Hb_003913_030 0.2128852824 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
5 Hb_012258_020 0.2175481818 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
6 Hb_001277_190 0.2202139458 - - hypothetical protein CICLE_v10005534mg [Citrus clementina]
7 Hb_000117_060 0.2207627214 - - PREDICTED: uncharacterized protein LOC103949199 [Pyrus x bretschneideri]
8 Hb_003637_020 0.2208944828 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003531_040 0.2222455209 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
10 Hb_095575_010 0.2248545478 - - hypothetical protein JCGZ_19529 [Jatropha curcas]
11 Hb_006711_070 0.2262401669 - - hypothetical protein RCOM_1336320 [Ricinus communis]
12 Hb_000270_770 0.2319589227 - - PREDICTED: uncharacterized protein LOC105640410 [Jatropha curcas]
13 Hb_185513_010 0.232385965 - - conserved hypothetical protein [Ricinus communis]
14 Hb_187697_010 0.2324527877 - - TMV resistance protein N, putative [Ricinus communis]
15 Hb_003835_090 0.2373240308 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 [Jatropha curcas]
16 Hb_002326_070 0.2449462811 - - ent-kaurene oxidase, chloroplastic [Jatropha curcas]
17 Hb_001357_280 0.2470919222 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
18 Hb_123885_010 0.2499188629 - - Disease resistance protein RPS5, putative [Ricinus communis]
19 Hb_012634_020 0.2514205802 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Jatropha curcas]
20 Hb_001863_270 0.2573434455 - - hypothetical protein JCGZ_15813 [Jatropha curcas]

Gene co-expression network

sample Hb_127404_010 Hb_127404_010 Hb_022534_010 Hb_022534_010 Hb_127404_010--Hb_022534_010 Hb_075230_010 Hb_075230_010 Hb_127404_010--Hb_075230_010 Hb_003913_030 Hb_003913_030 Hb_127404_010--Hb_003913_030 Hb_012258_020 Hb_012258_020 Hb_127404_010--Hb_012258_020 Hb_001277_190 Hb_001277_190 Hb_127404_010--Hb_001277_190 Hb_000117_060 Hb_000117_060 Hb_127404_010--Hb_000117_060 Hb_008092_030 Hb_008092_030 Hb_022534_010--Hb_008092_030 Hb_187697_010 Hb_187697_010 Hb_022534_010--Hb_187697_010 Hb_003637_020 Hb_003637_020 Hb_022534_010--Hb_003637_020 Hb_000960_020 Hb_000960_020 Hb_022534_010--Hb_000960_020 Hb_001178_040 Hb_001178_040 Hb_022534_010--Hb_001178_040 Hb_009393_180 Hb_009393_180 Hb_075230_010--Hb_009393_180 Hb_001484_100 Hb_001484_100 Hb_075230_010--Hb_001484_100 Hb_012634_020 Hb_012634_020 Hb_075230_010--Hb_012634_020 Hb_075230_010--Hb_001277_190 Hb_027402_040 Hb_027402_040 Hb_075230_010--Hb_027402_040 Hb_078568_010 Hb_078568_010 Hb_075230_010--Hb_078568_010 Hb_003531_040 Hb_003531_040 Hb_003913_030--Hb_003531_040 Hb_000220_090 Hb_000220_090 Hb_003913_030--Hb_000220_090 Hb_006916_200 Hb_006916_200 Hb_003913_030--Hb_006916_200 Hb_003913_030--Hb_000117_060 Hb_056012_010 Hb_056012_010 Hb_003913_030--Hb_056012_010 Hb_003913_030--Hb_003637_020 Hb_012258_020--Hb_000117_060 Hb_005568_130 Hb_005568_130 Hb_012258_020--Hb_005568_130 Hb_041895_040 Hb_041895_040 Hb_012258_020--Hb_041895_040 Hb_012258_020--Hb_003637_020 Hb_000594_110 Hb_000594_110 Hb_012258_020--Hb_000594_110 Hb_001518_060 Hb_001518_060 Hb_012258_020--Hb_001518_060 Hb_095575_010 Hb_095575_010 Hb_001277_190--Hb_095575_010 Hb_002196_010 Hb_002196_010 Hb_001277_190--Hb_002196_010 Hb_001277_190--Hb_003913_030 Hb_001277_190--Hb_012634_020 Hb_006711_070 Hb_006711_070 Hb_000117_060--Hb_006711_070 Hb_000117_060--Hb_003637_020 Hb_185513_010 Hb_185513_010 Hb_000117_060--Hb_185513_010 Hb_001437_010 Hb_001437_010 Hb_000117_060--Hb_001437_010 Hb_138585_100 Hb_138585_100 Hb_000117_060--Hb_138585_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.44877 2.16471 0.605573 1.18276 0.0672137 0.583674
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.286336 0.175207 0.0469961 0.0299791 0

CAGE analysis