Hb_008092_030

Information

Type transcription factor
Description TF Family: AUX/IAA
Location Contig8092: 52016-55843
Sequence    

Annotation

kegg
ID rcu:RCOM_1051590
description Auxin-responsive protein IAA27, putative
nr
ID XP_002514266.1
description Auxin-responsive protein IAA27, putative [Ricinus communis]
swissprot
ID Q9ZSY8
description Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=1 SV=1
trembl
ID B9RKM2
description Auxin-responsive protein OS=Ricinus communis GN=RCOM_1051590 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin-responsive protein iaa27

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59180: 51609-51834 , PASA_asmbl_59181: 51907-55987 , PASA_asmbl_59182: 51907-55592
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008092_030 0.0 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA27, putative [Ricinus communis]
2 Hb_187697_010 0.1825759722 - - TMV resistance protein N, putative [Ricinus communis]
3 Hb_007304_100 0.1866360241 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Jatropha curcas]
4 Hb_022534_010 0.1916828748 - - hypothetical protein CICLE_v10000066mg [Citrus clementina]
5 Hb_000960_020 0.2104987846 - - -
6 Hb_000805_330 0.2113348223 - - PREDICTED: ricin-like [Elaeis guineensis]
7 Hb_000099_190 0.2162974976 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
8 Hb_055993_010 0.2182194106 - - PREDICTED: uncharacterized protein LOC104883809 [Beta vulgaris subsp. vulgaris]
9 Hb_035761_010 0.2185269349 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
10 Hb_186647_010 0.218924851 - - -
11 Hb_000003_430 0.2195519881 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
12 Hb_000733_090 0.2212660424 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
13 Hb_111881_030 0.2279817491 - - PREDICTED: uncharacterized protein LOC105645255 [Jatropha curcas]
14 Hb_004611_060 0.2312452923 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
15 Hb_049915_010 0.2320607672 - - PREDICTED: uncharacterized serine-rich protein C215.13 [Jatropha curcas]
16 Hb_005656_160 0.2330983953 - - PREDICTED: uncharacterized protein LOC105637448 [Jatropha curcas]
17 Hb_002984_020 0.2337305043 - - hypothetical protein EUGRSUZ_J02661 [Eucalyptus grandis]
18 Hb_000342_140 0.2338961089 - - PREDICTED: vacuolar-processing enzyme-like [Jatropha curcas]
19 Hb_000732_240 0.2343862288 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
20 Hb_003906_030 0.2344040474 - - mads box protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_008092_030 Hb_008092_030 Hb_187697_010 Hb_187697_010 Hb_008092_030--Hb_187697_010 Hb_007304_100 Hb_007304_100 Hb_008092_030--Hb_007304_100 Hb_022534_010 Hb_022534_010 Hb_008092_030--Hb_022534_010 Hb_000960_020 Hb_000960_020 Hb_008092_030--Hb_000960_020 Hb_000805_330 Hb_000805_330 Hb_008092_030--Hb_000805_330 Hb_000099_190 Hb_000099_190 Hb_008092_030--Hb_000099_190 Hb_000003_430 Hb_000003_430 Hb_187697_010--Hb_000003_430 Hb_000029_280 Hb_000029_280 Hb_187697_010--Hb_000029_280 Hb_000506_130 Hb_000506_130 Hb_187697_010--Hb_000506_130 Hb_127628_010 Hb_127628_010 Hb_187697_010--Hb_127628_010 Hb_008725_190 Hb_008725_190 Hb_187697_010--Hb_008725_190 Hb_003913_030 Hb_003913_030 Hb_187697_010--Hb_003913_030 Hb_005687_060 Hb_005687_060 Hb_007304_100--Hb_005687_060 Hb_001481_110 Hb_001481_110 Hb_007304_100--Hb_001481_110 Hb_007304_100--Hb_000805_330 Hb_007304_100--Hb_008725_190 Hb_003906_150 Hb_003906_150 Hb_007304_100--Hb_003906_150 Hb_055993_010 Hb_055993_010 Hb_007304_100--Hb_055993_010 Hb_127404_010 Hb_127404_010 Hb_022534_010--Hb_127404_010 Hb_022534_010--Hb_187697_010 Hb_003637_020 Hb_003637_020 Hb_022534_010--Hb_003637_020 Hb_022534_010--Hb_000960_020 Hb_001178_040 Hb_001178_040 Hb_022534_010--Hb_001178_040 Hb_003906_030 Hb_003906_030 Hb_000960_020--Hb_003906_030 Hb_091336_010 Hb_091336_010 Hb_000960_020--Hb_091336_010 Hb_178711_010 Hb_178711_010 Hb_000960_020--Hb_178711_010 Hb_000304_040 Hb_000304_040 Hb_000960_020--Hb_000304_040 Hb_000008_040 Hb_000008_040 Hb_000805_330--Hb_000008_040 Hb_000318_320 Hb_000318_320 Hb_000805_330--Hb_000318_320 Hb_000805_330--Hb_008725_190 Hb_005183_010 Hb_005183_010 Hb_000805_330--Hb_005183_010 Hb_007007_110 Hb_007007_110 Hb_000805_330--Hb_007007_110 Hb_000732_240 Hb_000732_240 Hb_000099_190--Hb_000732_240 Hb_035761_010 Hb_035761_010 Hb_000099_190--Hb_035761_010 Hb_049915_010 Hb_049915_010 Hb_000099_190--Hb_049915_010 Hb_000438_150 Hb_000438_150 Hb_000099_190--Hb_000438_150 Hb_000914_050 Hb_000914_050 Hb_000099_190--Hb_000914_050 Hb_001103_070 Hb_001103_070 Hb_000099_190--Hb_001103_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.76943 132.381 9.88963 166.881 12.0283 26.4198
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.24356 5.30727 2.61211 4.42252 1.86073

CAGE analysis