Hb_008725_190

Information

Type transcription factor
Description TF Family: C2H2
Location Contig8725: 113693-114271
Sequence    

Annotation

kegg
ID pop:POPTR_0002s20020g
description POPTRDRAFT_552499; hypothetical protein
nr
ID XP_012083798.1
description PREDICTED: zinc finger protein 5-like [Jatropha curcas]
swissprot
ID Q39262
description Zinc finger protein 3 OS=Arabidopsis thaliana GN=ZFP3 PE=2 SV=1
trembl
ID A0A067K7K5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13996 PE=4 SV=1
Gene Ontology
ID GO:0005488
description zinc finger protein 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008725_190 0.0 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 5-like [Jatropha curcas]
2 Hb_003800_010 0.1504811833 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
3 Hb_001227_010 0.1534924684 transcription factor TF Family: TCP hypothetical protein POPTR_0015s03140g [Populus trichocarpa]
4 Hb_007304_100 0.1558027879 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Jatropha curcas]
5 Hb_131957_010 0.156904006 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
6 Hb_043115_010 0.160538189 - - hypothetical protein JCGZ_16710 [Jatropha curcas]
7 Hb_000661_010 0.1605547466 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
8 Hb_005687_060 0.1661378154 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X1 [Jatropha curcas]
9 Hb_000805_330 0.1726195943 - - PREDICTED: ricin-like [Elaeis guineensis]
10 Hb_187697_010 0.173501503 - - TMV resistance protein N, putative [Ricinus communis]
11 Hb_132517_010 0.1746766708 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like isoform X3 [Populus euphratica]
12 Hb_111881_030 0.1749862156 - - PREDICTED: uncharacterized protein LOC105645255 [Jatropha curcas]
13 Hb_009620_010 0.1758825352 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
14 Hb_002107_080 0.1785748101 - - JHL20J20.3 [Jatropha curcas]
15 Hb_000984_120 0.1810278167 - - receptor protein kinase, putative [Ricinus communis]
16 Hb_052113_020 0.1832444151 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
17 Hb_151616_010 0.1848130568 - - -
18 Hb_000000_280 0.1855173301 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004968_050 0.1866110055 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
20 Hb_005183_010 0.1871391882 - - PREDICTED: probable calcium-binding protein CML17 [Malus domestica]

Gene co-expression network

sample Hb_008725_190 Hb_008725_190 Hb_003800_010 Hb_003800_010 Hb_008725_190--Hb_003800_010 Hb_001227_010 Hb_001227_010 Hb_008725_190--Hb_001227_010 Hb_007304_100 Hb_007304_100 Hb_008725_190--Hb_007304_100 Hb_131957_010 Hb_131957_010 Hb_008725_190--Hb_131957_010 Hb_043115_010 Hb_043115_010 Hb_008725_190--Hb_043115_010 Hb_000661_010 Hb_000661_010 Hb_008725_190--Hb_000661_010 Hb_000252_190 Hb_000252_190 Hb_003800_010--Hb_000252_190 Hb_004143_050 Hb_004143_050 Hb_003800_010--Hb_004143_050 Hb_087468_010 Hb_087468_010 Hb_003800_010--Hb_087468_010 Hb_000417_230 Hb_000417_230 Hb_003800_010--Hb_000417_230 Hb_052113_020 Hb_052113_020 Hb_003800_010--Hb_052113_020 Hb_005687_060 Hb_005687_060 Hb_003800_010--Hb_005687_060 Hb_002639_120 Hb_002639_120 Hb_001227_010--Hb_002639_120 Hb_021443_020 Hb_021443_020 Hb_001227_010--Hb_021443_020 Hb_151616_010 Hb_151616_010 Hb_001227_010--Hb_151616_010 Hb_006890_050 Hb_006890_050 Hb_001227_010--Hb_006890_050 Hb_132517_010 Hb_132517_010 Hb_001227_010--Hb_132517_010 Hb_001610_050 Hb_001610_050 Hb_001227_010--Hb_001610_050 Hb_007304_100--Hb_005687_060 Hb_001481_110 Hb_001481_110 Hb_007304_100--Hb_001481_110 Hb_000805_330 Hb_000805_330 Hb_007304_100--Hb_000805_330 Hb_003906_150 Hb_003906_150 Hb_007304_100--Hb_003906_150 Hb_055993_010 Hb_055993_010 Hb_007304_100--Hb_055993_010 Hb_004195_030 Hb_004195_030 Hb_131957_010--Hb_004195_030 Hb_004458_010 Hb_004458_010 Hb_131957_010--Hb_004458_010 Hb_000318_320 Hb_000318_320 Hb_131957_010--Hb_000318_320 Hb_131957_010--Hb_132517_010 Hb_131957_010--Hb_001227_010 Hb_165552_020 Hb_165552_020 Hb_043115_010--Hb_165552_020 Hb_005040_010 Hb_005040_010 Hb_043115_010--Hb_005040_010 Hb_002420_030 Hb_002420_030 Hb_043115_010--Hb_002420_030 Hb_011609_060 Hb_011609_060 Hb_043115_010--Hb_011609_060 Hb_010573_030 Hb_010573_030 Hb_043115_010--Hb_010573_030 Hb_002107_080 Hb_002107_080 Hb_043115_010--Hb_002107_080 Hb_000777_020 Hb_000777_020 Hb_000661_010--Hb_000777_020 Hb_005389_090 Hb_005389_090 Hb_000661_010--Hb_005389_090 Hb_009620_010 Hb_009620_010 Hb_000661_010--Hb_009620_010 Hb_010142_040 Hb_010142_040 Hb_000661_010--Hb_010142_040 Hb_000661_010--Hb_132517_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.266268 8.20973 0.574795 6.17118 0.0430443 0.0706478
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.106522 0.251131 0.145614 0.378459 0

CAGE analysis