Hb_009620_010

Information

Type transcription factor
Description TF Family: Orphans
Location Contig9620: 5422-6622
Sequence    

Annotation

kegg
ID rcu:RCOM_1575600
description hypothetical protein
nr
ID XP_002513394.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O50055
description Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1
trembl
ID B9RI25
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1575600 PE=4 SV=1
Gene Ontology
ID GO:0009987
description activator of spomin::

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009620_010 0.0 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
2 Hb_002420_030 0.1188003098 - - Disease resistance protein RPS5, putative [Ricinus communis]
3 Hb_001957_050 0.1284165431 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
4 Hb_043115_010 0.1320552589 - - hypothetical protein JCGZ_16710 [Jatropha curcas]
5 Hb_039410_010 0.1379022609 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
6 Hb_002422_010 0.1441056917 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
7 Hb_010012_020 0.1444317659 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003012_010 0.1467738701 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000661_010 0.1499785518 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
10 Hb_005040_010 0.1542014417 - - hypothetical protein RCOM_1110360 [Ricinus communis]
11 Hb_000167_090 0.1547220901 - - conserved hypothetical protein [Ricinus communis]
12 Hb_165552_020 0.1562293103 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
13 Hb_002869_040 0.1580157771 - - PREDICTED: metal tolerance protein 4 [Jatropha curcas]
14 Hb_000203_090 0.158220286 - - hypothetical protein POPTR_0013s04080g [Populus trichocarpa]
15 Hb_003674_010 0.1647788784 - - purine transporter, putative [Ricinus communis]
16 Hb_000021_010 0.1654711877 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002025_120 0.1685525206 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105634212 [Jatropha curcas]
18 Hb_151616_010 0.1685941799 - - -
19 Hb_006590_030 0.169686533 - - unknown [Populus trichocarpa]
20 Hb_003602_080 0.1705375733 - - hypothetical protein POPTR_0002s10890g [Populus trichocarpa]

Gene co-expression network

sample Hb_009620_010 Hb_009620_010 Hb_002420_030 Hb_002420_030 Hb_009620_010--Hb_002420_030 Hb_001957_050 Hb_001957_050 Hb_009620_010--Hb_001957_050 Hb_043115_010 Hb_043115_010 Hb_009620_010--Hb_043115_010 Hb_039410_010 Hb_039410_010 Hb_009620_010--Hb_039410_010 Hb_002422_010 Hb_002422_010 Hb_009620_010--Hb_002422_010 Hb_010012_020 Hb_010012_020 Hb_009620_010--Hb_010012_020 Hb_165552_020 Hb_165552_020 Hb_002420_030--Hb_165552_020 Hb_002420_030--Hb_010012_020 Hb_005040_010 Hb_005040_010 Hb_002420_030--Hb_005040_010 Hb_002420_030--Hb_001957_050 Hb_003674_010 Hb_003674_010 Hb_002420_030--Hb_003674_010 Hb_002420_030--Hb_039410_010 Hb_002869_040 Hb_002869_040 Hb_001957_050--Hb_002869_040 Hb_006590_030 Hb_006590_030 Hb_001957_050--Hb_006590_030 Hb_001957_050--Hb_005040_010 Hb_000167_090 Hb_000167_090 Hb_001957_050--Hb_000167_090 Hb_001957_050--Hb_039410_010 Hb_043115_010--Hb_165552_020 Hb_043115_010--Hb_005040_010 Hb_043115_010--Hb_002420_030 Hb_011609_060 Hb_011609_060 Hb_043115_010--Hb_011609_060 Hb_010573_030 Hb_010573_030 Hb_043115_010--Hb_010573_030 Hb_002107_080 Hb_002107_080 Hb_043115_010--Hb_002107_080 Hb_000203_090 Hb_000203_090 Hb_039410_010--Hb_000203_090 Hb_039410_010--Hb_000167_090 Hb_039410_010--Hb_165552_020 Hb_039410_010--Hb_005040_010 Hb_003602_080 Hb_003602_080 Hb_039410_010--Hb_003602_080 Hb_003012_010 Hb_003012_010 Hb_002422_010--Hb_003012_010 Hb_151616_010 Hb_151616_010 Hb_002422_010--Hb_151616_010 Hb_002422_010--Hb_000167_090 Hb_000286_210 Hb_000286_210 Hb_002422_010--Hb_000286_210 Hb_001808_010 Hb_001808_010 Hb_002422_010--Hb_001808_010 Hb_002422_010--Hb_039410_010 Hb_010012_020--Hb_003674_010 Hb_010012_020--Hb_003602_080 Hb_010012_020--Hb_010573_030 Hb_010012_020--Hb_165552_020 Hb_011429_010 Hb_011429_010 Hb_010012_020--Hb_011429_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.49707 0.200286 1.42256 0.0517228 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0465135 0 0.0187663 0

CAGE analysis