Hb_043115_010

Information

Type -
Description -
Location Contig43115: 3899-4108
Sequence    

Annotation

kegg
ID rcu:RCOM_1527040
description hypothetical protein
nr
ID KDP43423.1
description hypothetical protein JCGZ_16710 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LGW0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16710 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42265: 3702-4069
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_043115_010 0.0 - - hypothetical protein JCGZ_16710 [Jatropha curcas]
2 Hb_165552_020 0.0997146907 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
3 Hb_005040_010 0.1108325208 - - hypothetical protein RCOM_1110360 [Ricinus communis]
4 Hb_002420_030 0.1165428252 - - Disease resistance protein RPS5, putative [Ricinus communis]
5 Hb_011609_060 0.1186694401 - - PREDICTED: cytokinin hydroxylase [Jatropha curcas]
6 Hb_010573_030 0.1254782777 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002107_080 0.1256743655 - - JHL20J20.3 [Jatropha curcas]
8 Hb_009697_010 0.1303237268 - - conserved hypothetical protein [Ricinus communis]
9 Hb_009620_010 0.1320552589 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
10 Hb_000417_230 0.1322609703 - - conserved hypothetical protein [Ricinus communis]
11 Hb_010012_020 0.1324783692 - - conserved hypothetical protein [Ricinus communis]
12 Hb_039410_010 0.1343311549 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
13 Hb_006590_030 0.1397610787 - - unknown [Populus trichocarpa]
14 Hb_092044_010 0.145239629 - - PREDICTED: uncharacterized protein LOC105636336 [Jatropha curcas]
15 Hb_007728_010 0.1452828792 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
16 Hb_004968_050 0.1463501005 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
17 Hb_094839_010 0.1479860567 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000984_120 0.1485915836 - - receptor protein kinase, putative [Ricinus communis]
19 Hb_003602_080 0.1488769853 - - hypothetical protein POPTR_0002s10890g [Populus trichocarpa]
20 Hb_001957_050 0.150050192 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]

Gene co-expression network

sample Hb_043115_010 Hb_043115_010 Hb_165552_020 Hb_165552_020 Hb_043115_010--Hb_165552_020 Hb_005040_010 Hb_005040_010 Hb_043115_010--Hb_005040_010 Hb_002420_030 Hb_002420_030 Hb_043115_010--Hb_002420_030 Hb_011609_060 Hb_011609_060 Hb_043115_010--Hb_011609_060 Hb_010573_030 Hb_010573_030 Hb_043115_010--Hb_010573_030 Hb_002107_080 Hb_002107_080 Hb_043115_010--Hb_002107_080 Hb_165552_020--Hb_005040_010 Hb_165552_020--Hb_002420_030 Hb_007728_010 Hb_007728_010 Hb_165552_020--Hb_007728_010 Hb_165552_020--Hb_010573_030 Hb_165552_020--Hb_011609_060 Hb_010012_020 Hb_010012_020 Hb_165552_020--Hb_010012_020 Hb_006590_030 Hb_006590_030 Hb_005040_010--Hb_006590_030 Hb_005040_010--Hb_011609_060 Hb_001957_050 Hb_001957_050 Hb_005040_010--Hb_001957_050 Hb_005040_010--Hb_002420_030 Hb_039410_010 Hb_039410_010 Hb_005040_010--Hb_039410_010 Hb_002420_030--Hb_010012_020 Hb_002420_030--Hb_001957_050 Hb_003674_010 Hb_003674_010 Hb_002420_030--Hb_003674_010 Hb_002420_030--Hb_039410_010 Hb_092044_010 Hb_092044_010 Hb_011609_060--Hb_092044_010 Hb_000984_120 Hb_000984_120 Hb_011609_060--Hb_000984_120 Hb_170979_010 Hb_170979_010 Hb_011609_060--Hb_170979_010 Hb_012753_100 Hb_012753_100 Hb_011609_060--Hb_012753_100 Hb_010573_030--Hb_007728_010 Hb_002422_020 Hb_002422_020 Hb_010573_030--Hb_002422_020 Hb_137612_010 Hb_137612_010 Hb_010573_030--Hb_137612_010 Hb_013591_010 Hb_013591_010 Hb_010573_030--Hb_013591_010 Hb_000134_010 Hb_000134_010 Hb_010573_030--Hb_000134_010 Hb_094839_010 Hb_094839_010 Hb_010573_030--Hb_094839_010 Hb_000417_230 Hb_000417_230 Hb_002107_080--Hb_000417_230 Hb_002107_080--Hb_094839_010 Hb_004968_050 Hb_004968_050 Hb_002107_080--Hb_004968_050 Hb_073973_180 Hb_073973_180 Hb_002107_080--Hb_073973_180 Hb_000318_320 Hb_000318_320 Hb_002107_080--Hb_000318_320 Hb_002107_080--Hb_010573_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.623263 1537.06 127.369 1088.65 1.33771 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.27057 29.4914 5.3214 0.888997 6.6475

CAGE analysis