Hb_000984_120

Information

Type -
Description -
Location Contig984: 177557-180370
Sequence    

Annotation

kegg
ID rcu:RCOM_1584610
description receptor protein kinase, putative (EC:2.7.11.25 1.3.1.74)
nr
ID XP_002510009.1
description receptor protein kinase, putative [Ricinus communis]
swissprot
ID O22938
description Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 OS=Arabidopsis thaliana GN=PXC3 PE=2 SV=1
trembl
ID B9R6R6
description Receptor protein kinase, putative OS=Ricinus communis GN=RCOM_1584610 PE=3 SV=1
Gene Ontology
ID GO:0005622
description receptor-like protein kinase hsl1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64546: 178629-178957 , PASA_asmbl_64547: 179550-180106
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000984_120 0.0 - - receptor protein kinase, putative [Ricinus communis]
2 Hb_011609_060 0.0688696202 - - PREDICTED: cytokinin hydroxylase [Jatropha curcas]
3 Hb_092044_010 0.0857175087 - - PREDICTED: uncharacterized protein LOC105636336 [Jatropha curcas]
4 Hb_170979_010 0.1023800567 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
5 Hb_091826_010 0.1052283843 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
6 Hb_000318_320 0.1056185355 - - PREDICTED: transmembrane protein 45B [Jatropha curcas]
7 Hb_085910_010 0.1173453022 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
8 Hb_012753_100 0.1175750411 - - conserved hypothetical protein [Ricinus communis]
9 Hb_021485_010 0.1187554141 - - Integrase-type DNA-binding superfamily protein, putative [Theobroma cacao]
10 Hb_008289_020 0.118839515 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
11 Hb_004961_010 0.1189991146 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
12 Hb_015183_050 0.1210410854 - - hypothetical protein JCGZ_24010 [Jatropha curcas]
13 Hb_010028_010 0.1223963753 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
14 Hb_081065_010 0.1226982623 - - hypothetical protein PHAVU_001G084100g, partial [Phaseolus vulgaris]
15 Hb_007235_040 0.1233999776 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_005040_010 0.1237320457 - - hypothetical protein RCOM_1110360 [Ricinus communis]
17 Hb_165552_020 0.1245897354 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
18 Hb_005366_030 0.127485637 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
19 Hb_019135_030 0.1281296233 - - putative mitogen-activated protein kinase 1 [Populus trichocarpa]
20 Hb_081287_010 0.1287475512 - - PREDICTED: alpha-dioxygenase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000984_120 Hb_000984_120 Hb_011609_060 Hb_011609_060 Hb_000984_120--Hb_011609_060 Hb_092044_010 Hb_092044_010 Hb_000984_120--Hb_092044_010 Hb_170979_010 Hb_170979_010 Hb_000984_120--Hb_170979_010 Hb_091826_010 Hb_091826_010 Hb_000984_120--Hb_091826_010 Hb_000318_320 Hb_000318_320 Hb_000984_120--Hb_000318_320 Hb_085910_010 Hb_085910_010 Hb_000984_120--Hb_085910_010 Hb_011609_060--Hb_092044_010 Hb_005040_010 Hb_005040_010 Hb_011609_060--Hb_005040_010 Hb_165552_020 Hb_165552_020 Hb_011609_060--Hb_165552_020 Hb_011609_060--Hb_170979_010 Hb_012753_100 Hb_012753_100 Hb_011609_060--Hb_012753_100 Hb_092044_010--Hb_170979_010 Hb_010028_010 Hb_010028_010 Hb_092044_010--Hb_010028_010 Hb_007235_040 Hb_007235_040 Hb_092044_010--Hb_007235_040 Hb_000206_280 Hb_000206_280 Hb_092044_010--Hb_000206_280 Hb_009393_010 Hb_009393_010 Hb_170979_010--Hb_009393_010 Hb_023502_010 Hb_023502_010 Hb_170979_010--Hb_023502_010 Hb_170979_010--Hb_000206_280 Hb_015183_050 Hb_015183_050 Hb_091826_010--Hb_015183_050 Hb_004961_010 Hb_004961_010 Hb_091826_010--Hb_004961_010 Hb_008289_020 Hb_008289_020 Hb_091826_010--Hb_008289_020 Hb_081065_010 Hb_081065_010 Hb_091826_010--Hb_081065_010 Hb_021485_010 Hb_021485_010 Hb_091826_010--Hb_021485_010 Hb_091826_010--Hb_012753_100 Hb_077562_010 Hb_077562_010 Hb_000318_320--Hb_077562_010 Hb_002107_080 Hb_002107_080 Hb_000318_320--Hb_002107_080 Hb_007007_110 Hb_007007_110 Hb_000318_320--Hb_007007_110 Hb_002078_210 Hb_002078_210 Hb_000318_320--Hb_002078_210 Hb_000318_320--Hb_011609_060 Hb_085910_010--Hb_012753_100 Hb_085910_010--Hb_021485_010 Hb_085910_010--Hb_008289_020 Hb_085910_010--Hb_004961_010 Hb_085910_010--Hb_010028_010 Hb_085910_010--Hb_015183_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00714847 0.902374 0.0220182 0.500805 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0101299 0

CAGE analysis