Hb_091826_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig91826: 506-7630
Sequence    

Annotation

kegg
ID rcu:RCOM_1681370
description leucine-rich repeat-containing protein, putative
nr
ID XP_012068500.1
description PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID A0A067JQ32
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21104 PE=4 SV=1
Gene Ontology
ID GO:0005515
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_091826_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
2 Hb_015183_050 0.0699003697 - - hypothetical protein JCGZ_24010 [Jatropha curcas]
3 Hb_004961_010 0.0702435146 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
4 Hb_008289_020 0.07035212 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
5 Hb_081065_010 0.0703887377 - - hypothetical protein PHAVU_001G084100g, partial [Phaseolus vulgaris]
6 Hb_021485_010 0.0704171722 - - Integrase-type DNA-binding superfamily protein, putative [Theobroma cacao]
7 Hb_012753_100 0.0724822762 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005366_030 0.0734347854 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
9 Hb_019135_030 0.073953674 - - putative mitogen-activated protein kinase 1 [Populus trichocarpa]
10 Hb_081287_010 0.0744680696 - - PREDICTED: alpha-dioxygenase 2 [Jatropha curcas]
11 Hb_110587_010 0.0755744983 - - unnamed protein product [Coffea canephora]
12 Hb_085910_010 0.0764965965 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
13 Hb_135513_010 0.0769782401 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_000983_180 0.0808550995 - - cytochrome P450, putative [Ricinus communis]
15 Hb_000172_020 0.0817287357 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Vitis vinifera]
16 Hb_005096_020 0.0832200241 - - PREDICTED: DIS3-like exonuclease 2-like isoform X1 [Citrus sinensis]
17 Hb_006856_060 0.0885189315 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
18 Hb_126916_010 0.0904905878 - - PREDICTED: putative receptor-like protein kinase At3g47110, partial [Jatropha curcas]
19 Hb_000302_050 0.0908848798 - - -
20 Hb_011045_020 0.0916146437 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_091826_010 Hb_091826_010 Hb_015183_050 Hb_015183_050 Hb_091826_010--Hb_015183_050 Hb_004961_010 Hb_004961_010 Hb_091826_010--Hb_004961_010 Hb_008289_020 Hb_008289_020 Hb_091826_010--Hb_008289_020 Hb_081065_010 Hb_081065_010 Hb_091826_010--Hb_081065_010 Hb_021485_010 Hb_021485_010 Hb_091826_010--Hb_021485_010 Hb_012753_100 Hb_012753_100 Hb_091826_010--Hb_012753_100 Hb_015183_050--Hb_081065_010 Hb_015183_050--Hb_004961_010 Hb_015183_050--Hb_008289_020 Hb_015183_050--Hb_021485_010 Hb_005366_030 Hb_005366_030 Hb_015183_050--Hb_005366_030 Hb_019135_030 Hb_019135_030 Hb_015183_050--Hb_019135_030 Hb_004961_010--Hb_008289_020 Hb_004961_010--Hb_021485_010 Hb_004961_010--Hb_012753_100 Hb_004961_010--Hb_081065_010 Hb_085910_010 Hb_085910_010 Hb_004961_010--Hb_085910_010 Hb_008289_020--Hb_021485_010 Hb_008289_020--Hb_012753_100 Hb_008289_020--Hb_081065_010 Hb_008289_020--Hb_085910_010 Hb_081065_010--Hb_005366_030 Hb_081065_010--Hb_019135_030 Hb_081287_010 Hb_081287_010 Hb_081065_010--Hb_081287_010 Hb_021485_010--Hb_012753_100 Hb_021485_010--Hb_081065_010 Hb_021485_010--Hb_085910_010 Hb_012753_100--Hb_085910_010 Hb_012753_100--Hb_015183_050 Hb_012753_100--Hb_081065_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.37391 0 0.237405 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00600373 0

CAGE analysis