Hb_019135_030

Information

Type -
Description -
Location Contig19135: 10590-11907
Sequence    

Annotation

kegg
ID pop:POPTR_0005s16210g
description POPTRDRAFT_1078383; putative mitogen-activated protein kinase 1
nr
ID XP_002306607.1
description putative mitogen-activated protein kinase 1 [Populus trichocarpa]
swissprot
ID Q39008
description Mitogen-activated protein kinase kinase kinase 1 OS=Arabidopsis thaliana GN=MEKK1 PE=1 SV=2
trembl
ID B9H7A0
description Putative mitogen-activated protein kinase 1 OS=Populus trichocarpa GN=POPTR_0005s16210g PE=4 SV=1
Gene Ontology
ID GO:0000166
description mitogen-activated protein kinase kinase kinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019135_030 0.0 - - putative mitogen-activated protein kinase 1 [Populus trichocarpa]
2 Hb_081287_010 0.001528817 - - PREDICTED: alpha-dioxygenase 2 [Jatropha curcas]
3 Hb_005366_030 0.0016343552 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
4 Hb_110587_010 0.0045755978 - - unnamed protein product [Coffea canephora]
5 Hb_135513_010 0.0080858871 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_081065_010 0.015672272 - - hypothetical protein PHAVU_001G084100g, partial [Phaseolus vulgaris]
7 Hb_000172_020 0.0182000311 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Vitis vinifera]
8 Hb_005096_020 0.0210149631 - - PREDICTED: DIS3-like exonuclease 2-like isoform X1 [Citrus sinensis]
9 Hb_015183_050 0.0218440918 - - hypothetical protein JCGZ_24010 [Jatropha curcas]
10 Hb_006856_060 0.0301809526 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
11 Hb_004961_010 0.0317166403 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
12 Hb_008289_020 0.0326909221 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
13 Hb_021485_010 0.0332241306 - - Integrase-type DNA-binding superfamily protein, putative [Theobroma cacao]
14 Hb_126916_010 0.0333456862 - - PREDICTED: putative receptor-like protein kinase At3g47110, partial [Jatropha curcas]
15 Hb_000302_050 0.0339660374 - - -
16 Hb_011045_020 0.0351040845 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
17 Hb_000770_020 0.0362265404 - - hypothetical protein POPTR_0001s39195g [Populus trichocarpa]
18 Hb_012753_100 0.0437074625 - - conserved hypothetical protein [Ricinus communis]
19 Hb_010374_010 0.0437177271 - - TMV resistance protein N, putative [Ricinus communis]
20 Hb_005839_070 0.0442067753 - - hypothetical protein POPTR_0013s08160g [Populus trichocarpa]

Gene co-expression network

sample Hb_019135_030 Hb_019135_030 Hb_081287_010 Hb_081287_010 Hb_019135_030--Hb_081287_010 Hb_005366_030 Hb_005366_030 Hb_019135_030--Hb_005366_030 Hb_110587_010 Hb_110587_010 Hb_019135_030--Hb_110587_010 Hb_135513_010 Hb_135513_010 Hb_019135_030--Hb_135513_010 Hb_081065_010 Hb_081065_010 Hb_019135_030--Hb_081065_010 Hb_000172_020 Hb_000172_020 Hb_019135_030--Hb_000172_020 Hb_081287_010--Hb_110587_010 Hb_081287_010--Hb_005366_030 Hb_081287_010--Hb_135513_010 Hb_081287_010--Hb_000172_020 Hb_081287_010--Hb_081065_010 Hb_005366_030--Hb_110587_010 Hb_005366_030--Hb_135513_010 Hb_005366_030--Hb_081065_010 Hb_005366_030--Hb_000172_020 Hb_110587_010--Hb_135513_010 Hb_110587_010--Hb_000172_020 Hb_005096_020 Hb_005096_020 Hb_110587_010--Hb_005096_020 Hb_135513_010--Hb_000172_020 Hb_135513_010--Hb_005096_020 Hb_015183_050 Hb_015183_050 Hb_081065_010--Hb_015183_050 Hb_004961_010 Hb_004961_010 Hb_081065_010--Hb_004961_010 Hb_008289_020 Hb_008289_020 Hb_081065_010--Hb_008289_020 Hb_000172_020--Hb_005096_020 Hb_006856_060 Hb_006856_060 Hb_000172_020--Hb_006856_060 Hb_126916_010 Hb_126916_010 Hb_000172_020--Hb_126916_010 Hb_000302_050 Hb_000302_050 Hb_000172_020--Hb_000302_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0648984 0 0.0463146 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis