Hb_135513_010

Information

Type -
Description -
Location Contig135513: 17161-25447
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_135513_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_110587_010 0.0035103366 - - unnamed protein product [Coffea canephora]
3 Hb_081287_010 0.0065570997 - - PREDICTED: alpha-dioxygenase 2 [Jatropha curcas]
4 Hb_019135_030 0.0080858871 - - putative mitogen-activated protein kinase 1 [Populus trichocarpa]
5 Hb_005366_030 0.0097201954 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
6 Hb_000172_020 0.0101146826 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Vitis vinifera]
7 Hb_005096_020 0.01292987 - - PREDICTED: DIS3-like exonuclease 2-like isoform X1 [Citrus sinensis]
8 Hb_006856_060 0.0220970064 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
9 Hb_081065_010 0.0237570513 - - hypothetical protein PHAVU_001G084100g, partial [Phaseolus vulgaris]
10 Hb_126916_010 0.0252622473 - - PREDICTED: putative receptor-like protein kinase At3g47110, partial [Jatropha curcas]
11 Hb_000302_050 0.0258827047 - - -
12 Hb_011045_020 0.0270209521 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
13 Hb_000770_020 0.0281436129 - - hypothetical protein POPTR_0001s39195g [Populus trichocarpa]
14 Hb_015183_050 0.0299280273 - - hypothetical protein JCGZ_24010 [Jatropha curcas]
15 Hb_010374_010 0.0356363488 - - TMV resistance protein N, putative [Ricinus communis]
16 Hb_005839_070 0.0361255092 - - hypothetical protein POPTR_0013s08160g [Populus trichocarpa]
17 Hb_004961_010 0.0397987383 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
18 Hb_003453_070 0.0403371669 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]
19 Hb_008289_020 0.0407728058 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
20 Hb_021485_010 0.0413058946 - - Integrase-type DNA-binding superfamily protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_135513_010 Hb_135513_010 Hb_110587_010 Hb_110587_010 Hb_135513_010--Hb_110587_010 Hb_081287_010 Hb_081287_010 Hb_135513_010--Hb_081287_010 Hb_019135_030 Hb_019135_030 Hb_135513_010--Hb_019135_030 Hb_005366_030 Hb_005366_030 Hb_135513_010--Hb_005366_030 Hb_000172_020 Hb_000172_020 Hb_135513_010--Hb_000172_020 Hb_005096_020 Hb_005096_020 Hb_135513_010--Hb_005096_020 Hb_110587_010--Hb_081287_010 Hb_110587_010--Hb_019135_030 Hb_110587_010--Hb_005366_030 Hb_110587_010--Hb_000172_020 Hb_110587_010--Hb_005096_020 Hb_081287_010--Hb_019135_030 Hb_081287_010--Hb_005366_030 Hb_081287_010--Hb_000172_020 Hb_081065_010 Hb_081065_010 Hb_081287_010--Hb_081065_010 Hb_019135_030--Hb_005366_030 Hb_019135_030--Hb_081065_010 Hb_019135_030--Hb_000172_020 Hb_005366_030--Hb_081065_010 Hb_005366_030--Hb_000172_020 Hb_000172_020--Hb_005096_020 Hb_006856_060 Hb_006856_060 Hb_000172_020--Hb_006856_060 Hb_126916_010 Hb_126916_010 Hb_000172_020--Hb_126916_010 Hb_000302_050 Hb_000302_050 Hb_000172_020--Hb_000302_050 Hb_005096_020--Hb_006856_060 Hb_005096_020--Hb_126916_010 Hb_005096_020--Hb_000302_050 Hb_011045_020 Hb_011045_020 Hb_005096_020--Hb_011045_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00417596 0 0.00309734 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis