Hb_110587_010

Information

Type -
Description -
Location Contig110587: 101-730
Sequence    

Annotation

kegg
ID tcc:TCM_036125
description Serine-threonine protein kinase
nr
ID CDP21144.1
description unnamed protein product [Coffea canephora]
swissprot
ID Q96CX6
description Leucine-rich repeat-containing protein 58 OS=Homo sapiens GN=LRRC58 PE=1 SV=2
trembl
ID A0A068VKL9
description Coffea canephora DH200=94 genomic scaffold, scaffold_2600 OS=Coffea canephora GN=GSCOC_T00011970001 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_110587_010 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_081287_010 0.0030467886 - - PREDICTED: alpha-dioxygenase 2 [Jatropha curcas]
3 Hb_135513_010 0.0035103366 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_019135_030 0.0045755978 - - putative mitogen-activated protein kinase 1 [Populus trichocarpa]
5 Hb_005366_030 0.006209936 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
6 Hb_000172_020 0.0136248445 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Vitis vinifera]
7 Hb_005096_020 0.0164399375 - - PREDICTED: DIS3-like exonuclease 2-like isoform X1 [Citrus sinensis]
8 Hb_081065_010 0.0202473345 - - hypothetical protein PHAVU_001G084100g, partial [Phaseolus vulgaris]
9 Hb_006856_060 0.0256066294 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
10 Hb_015183_050 0.0264187128 - - hypothetical protein JCGZ_24010 [Jatropha curcas]
11 Hb_126916_010 0.0287716686 - - PREDICTED: putative receptor-like protein kinase At3g47110, partial [Jatropha curcas]
12 Hb_000302_050 0.0293920835 - - -
13 Hb_011045_020 0.0305302506 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
14 Hb_000770_020 0.0316528289 - - hypothetical protein POPTR_0001s39195g [Populus trichocarpa]
15 Hb_004961_010 0.036290279 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
16 Hb_008289_020 0.0372644452 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
17 Hb_021485_010 0.0377975891 - - Integrase-type DNA-binding superfamily protein, putative [Theobroma cacao]
18 Hb_010374_010 0.0391449358 - - TMV resistance protein N, putative [Ricinus communis]
19 Hb_005839_070 0.0396340504 - - hypothetical protein POPTR_0013s08160g [Populus trichocarpa]
20 Hb_003453_070 0.0438452893 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]

Gene co-expression network

sample Hb_110587_010 Hb_110587_010 Hb_081287_010 Hb_081287_010 Hb_110587_010--Hb_081287_010 Hb_135513_010 Hb_135513_010 Hb_110587_010--Hb_135513_010 Hb_019135_030 Hb_019135_030 Hb_110587_010--Hb_019135_030 Hb_005366_030 Hb_005366_030 Hb_110587_010--Hb_005366_030 Hb_000172_020 Hb_000172_020 Hb_110587_010--Hb_000172_020 Hb_005096_020 Hb_005096_020 Hb_110587_010--Hb_005096_020 Hb_081287_010--Hb_019135_030 Hb_081287_010--Hb_005366_030 Hb_081287_010--Hb_135513_010 Hb_081287_010--Hb_000172_020 Hb_081065_010 Hb_081065_010 Hb_081287_010--Hb_081065_010 Hb_135513_010--Hb_019135_030 Hb_135513_010--Hb_005366_030 Hb_135513_010--Hb_000172_020 Hb_135513_010--Hb_005096_020 Hb_019135_030--Hb_005366_030 Hb_019135_030--Hb_081065_010 Hb_019135_030--Hb_000172_020 Hb_005366_030--Hb_081065_010 Hb_005366_030--Hb_000172_020 Hb_000172_020--Hb_005096_020 Hb_006856_060 Hb_006856_060 Hb_000172_020--Hb_006856_060 Hb_126916_010 Hb_126916_010 Hb_000172_020--Hb_126916_010 Hb_000302_050 Hb_000302_050 Hb_000172_020--Hb_000302_050 Hb_005096_020--Hb_006856_060 Hb_005096_020--Hb_126916_010 Hb_005096_020--Hb_000302_050 Hb_011045_020 Hb_011045_020 Hb_005096_020--Hb_011045_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.332942 0 0.242849 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis