Hb_000172_020

Information

Type -
Description -
Location Contig172: 54000-67086
Sequence    

Annotation

kegg
ID vvi:100244487
description succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial
nr
ID XP_002264752.2
description PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Vitis vinifera]
swissprot
ID Q9FJP9
description Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial OS=Arabidopsis thaliana GN=SDH2-3 PE=1 SV=1
trembl
ID B9T7U2
description Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Ricinus communis GN=RCOM_0325190 PE=3 SV=1
Gene Ontology
ID GO:0005739
description succinate dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_020 0.0 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Vitis vinifera]
2 Hb_005096_020 0.0028153194 - - PREDICTED: DIS3-like exonuclease 2-like isoform X1 [Citrus sinensis]
3 Hb_135513_010 0.0101146826 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_006856_060 0.0119832807 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
5 Hb_110587_010 0.0136248445 - - unnamed protein product [Coffea canephora]
6 Hb_126916_010 0.0151489461 - - PREDICTED: putative receptor-like protein kinase At3g47110, partial [Jatropha curcas]
7 Hb_000302_050 0.015769495 - - -
8 Hb_081287_010 0.0166713825 - - PREDICTED: alpha-dioxygenase 2 [Jatropha curcas]
9 Hb_011045_020 0.0169079175 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
10 Hb_000770_020 0.0180307599 - - hypothetical protein POPTR_0001s39195g [Populus trichocarpa]
11 Hb_019135_030 0.0182000311 - - putative mitogen-activated protein kinase 1 [Populus trichocarpa]
12 Hb_005366_030 0.0198341718 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
13 Hb_010374_010 0.025524937 - - TMV resistance protein N, putative [Ricinus communis]
14 Hb_005839_070 0.0260142052 - - hypothetical protein POPTR_0013s08160g [Populus trichocarpa]
15 Hb_003453_070 0.0302268614 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]
16 Hb_081065_010 0.0338687672 - - hypothetical protein PHAVU_001G084100g, partial [Phaseolus vulgaris]
17 Hb_015183_050 0.0400382781 - - hypothetical protein JCGZ_24010 [Jatropha curcas]
18 Hb_001975_060 0.0417171684 - - hypothetical protein JCGZ_11079 [Jatropha curcas]
19 Hb_103659_010 0.0490894663 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004961_010 0.0499060372 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]

Gene co-expression network

sample Hb_000172_020 Hb_000172_020 Hb_005096_020 Hb_005096_020 Hb_000172_020--Hb_005096_020 Hb_135513_010 Hb_135513_010 Hb_000172_020--Hb_135513_010 Hb_006856_060 Hb_006856_060 Hb_000172_020--Hb_006856_060 Hb_110587_010 Hb_110587_010 Hb_000172_020--Hb_110587_010 Hb_126916_010 Hb_126916_010 Hb_000172_020--Hb_126916_010 Hb_000302_050 Hb_000302_050 Hb_000172_020--Hb_000302_050 Hb_005096_020--Hb_006856_060 Hb_005096_020--Hb_126916_010 Hb_005096_020--Hb_135513_010 Hb_005096_020--Hb_000302_050 Hb_011045_020 Hb_011045_020 Hb_005096_020--Hb_011045_020 Hb_135513_010--Hb_110587_010 Hb_081287_010 Hb_081287_010 Hb_135513_010--Hb_081287_010 Hb_019135_030 Hb_019135_030 Hb_135513_010--Hb_019135_030 Hb_005366_030 Hb_005366_030 Hb_135513_010--Hb_005366_030 Hb_006856_060--Hb_126916_010 Hb_006856_060--Hb_000302_050 Hb_006856_060--Hb_011045_020 Hb_000770_020 Hb_000770_020 Hb_006856_060--Hb_000770_020 Hb_110587_010--Hb_081287_010 Hb_110587_010--Hb_019135_030 Hb_110587_010--Hb_005366_030 Hb_110587_010--Hb_005096_020 Hb_126916_010--Hb_000302_050 Hb_126916_010--Hb_011045_020 Hb_126916_010--Hb_000770_020 Hb_010374_010 Hb_010374_010 Hb_126916_010--Hb_010374_010 Hb_005839_070 Hb_005839_070 Hb_126916_010--Hb_005839_070 Hb_000302_050--Hb_011045_020 Hb_000302_050--Hb_000770_020 Hb_000302_050--Hb_010374_010 Hb_000302_050--Hb_005839_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0960823 0 0.0747757 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis