Hb_005096_020

Information

Type -
Description -
Location Contig5096: 55288-57646
Sequence    

Annotation

kegg
ID cit:102619579
description DIS3-like exonuclease 2-like
nr
ID XP_006472741.1
description PREDICTED: DIS3-like exonuclease 2-like isoform X1 [Citrus sinensis]
swissprot
ID Q93WU6
description Probable WRKY transcription factor 74 OS=Arabidopsis thaliana GN=WRKY74 PE=2 SV=2
trembl
ID M0TZ83
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
Gene Ontology
ID GO:0000932
description probable wrky transcription factor 21

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46231: 56391-56691
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005096_020 0.0 - - PREDICTED: DIS3-like exonuclease 2-like isoform X1 [Citrus sinensis]
2 Hb_000172_020 0.0028153194 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Vitis vinifera]
3 Hb_006856_060 0.0091680712 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
4 Hb_126916_010 0.0123338134 - - PREDICTED: putative receptor-like protein kinase At3g47110, partial [Jatropha curcas]
5 Hb_135513_010 0.01292987 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_000302_050 0.0129543798 - - -
7 Hb_011045_020 0.0140928361 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
8 Hb_000770_020 0.0152157146 - - hypothetical protein POPTR_0001s39195g [Populus trichocarpa]
9 Hb_110587_010 0.0164399375 - - unnamed protein product [Coffea canephora]
10 Hb_081287_010 0.0194863731 - - PREDICTED: alpha-dioxygenase 2 [Jatropha curcas]
11 Hb_019135_030 0.0210149631 - - putative mitogen-activated protein kinase 1 [Populus trichocarpa]
12 Hb_005366_030 0.0226490359 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
13 Hb_010374_010 0.0227101952 - - TMV resistance protein N, putative [Ricinus communis]
14 Hb_005839_070 0.0231994871 - - hypothetical protein POPTR_0013s08160g [Populus trichocarpa]
15 Hb_003453_070 0.0274123664 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]
16 Hb_081065_010 0.0366828194 - - hypothetical protein PHAVU_001G084100g, partial [Phaseolus vulgaris]
17 Hb_001975_060 0.0389034584 - - hypothetical protein JCGZ_11079 [Jatropha curcas]
18 Hb_015183_050 0.0428518425 - - hypothetical protein JCGZ_24010 [Jatropha curcas]
19 Hb_103659_010 0.0462763951 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004077_010 0.0471412997 - - retinoblastoma-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005096_020 Hb_005096_020 Hb_000172_020 Hb_000172_020 Hb_005096_020--Hb_000172_020 Hb_006856_060 Hb_006856_060 Hb_005096_020--Hb_006856_060 Hb_126916_010 Hb_126916_010 Hb_005096_020--Hb_126916_010 Hb_135513_010 Hb_135513_010 Hb_005096_020--Hb_135513_010 Hb_000302_050 Hb_000302_050 Hb_005096_020--Hb_000302_050 Hb_011045_020 Hb_011045_020 Hb_005096_020--Hb_011045_020 Hb_000172_020--Hb_135513_010 Hb_000172_020--Hb_006856_060 Hb_110587_010 Hb_110587_010 Hb_000172_020--Hb_110587_010 Hb_000172_020--Hb_126916_010 Hb_000172_020--Hb_000302_050 Hb_006856_060--Hb_126916_010 Hb_006856_060--Hb_000302_050 Hb_006856_060--Hb_011045_020 Hb_000770_020 Hb_000770_020 Hb_006856_060--Hb_000770_020 Hb_126916_010--Hb_000302_050 Hb_126916_010--Hb_011045_020 Hb_126916_010--Hb_000770_020 Hb_010374_010 Hb_010374_010 Hb_126916_010--Hb_010374_010 Hb_005839_070 Hb_005839_070 Hb_126916_010--Hb_005839_070 Hb_135513_010--Hb_110587_010 Hb_081287_010 Hb_081287_010 Hb_135513_010--Hb_081287_010 Hb_019135_030 Hb_019135_030 Hb_135513_010--Hb_019135_030 Hb_005366_030 Hb_005366_030 Hb_135513_010--Hb_005366_030 Hb_000302_050--Hb_011045_020 Hb_000302_050--Hb_000770_020 Hb_000302_050--Hb_010374_010 Hb_000302_050--Hb_005839_070 Hb_011045_020--Hb_000770_020 Hb_011045_020--Hb_010374_010 Hb_011045_020--Hb_005839_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0909313 0 0.0717186 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis