Hb_081287_010

Information

Type -
Description -
Location Contig81287: 2788-3472
Sequence    

Annotation

kegg
ID rcu:RCOM_0570940
description oxidoreductase, putative (EC:1.14.99.1)
nr
ID XP_012068428.1
description PREDICTED: alpha-dioxygenase 2 [Jatropha curcas]
swissprot
ID Q9C9U3
description Alpha-dioxygenase 2 OS=Arabidopsis thaliana GN=DOX2 PE=2 SV=1
trembl
ID A0A067KY34
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03612 PE=4 SV=1
Gene Ontology
ID GO:0004601
description alpha-dioxygenase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_081287_010 0.0 - - PREDICTED: alpha-dioxygenase 2 [Jatropha curcas]
2 Hb_019135_030 0.001528817 - - putative mitogen-activated protein kinase 1 [Populus trichocarpa]
3 Hb_110587_010 0.0030467886 - - unnamed protein product [Coffea canephora]
4 Hb_005366_030 0.0031631693 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
5 Hb_135513_010 0.0065570997 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_000172_020 0.0166713825 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Vitis vinifera]
7 Hb_081065_010 0.0172009368 - - hypothetical protein PHAVU_001G084100g, partial [Phaseolus vulgaris]
8 Hb_005096_020 0.0194863731 - - PREDICTED: DIS3-like exonuclease 2-like isoform X1 [Citrus sinensis]
9 Hb_015183_050 0.0233726195 - - hypothetical protein JCGZ_24010 [Jatropha curcas]
10 Hb_006856_060 0.0286526128 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
11 Hb_126916_010 0.0318174539 - - PREDICTED: putative receptor-like protein kinase At3g47110, partial [Jatropha curcas]
12 Hb_000302_050 0.0324378274 - - -
13 Hb_004961_010 0.0332448566 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
14 Hb_011045_020 0.0335759165 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
15 Hb_008289_020 0.0342191014 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
16 Hb_000770_020 0.0346984152 - - hypothetical protein POPTR_0001s39195g [Populus trichocarpa]
17 Hb_021485_010 0.0347522892 - - Integrase-type DNA-binding superfamily protein, putative [Theobroma cacao]
18 Hb_010374_010 0.042189922 - - TMV resistance protein N, putative [Ricinus communis]
19 Hb_005839_070 0.0426789932 - - hypothetical protein POPTR_0013s08160g [Populus trichocarpa]
20 Hb_012753_100 0.045235145 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_081287_010 Hb_081287_010 Hb_019135_030 Hb_019135_030 Hb_081287_010--Hb_019135_030 Hb_110587_010 Hb_110587_010 Hb_081287_010--Hb_110587_010 Hb_005366_030 Hb_005366_030 Hb_081287_010--Hb_005366_030 Hb_135513_010 Hb_135513_010 Hb_081287_010--Hb_135513_010 Hb_000172_020 Hb_000172_020 Hb_081287_010--Hb_000172_020 Hb_081065_010 Hb_081065_010 Hb_081287_010--Hb_081065_010 Hb_019135_030--Hb_005366_030 Hb_019135_030--Hb_110587_010 Hb_019135_030--Hb_135513_010 Hb_019135_030--Hb_081065_010 Hb_019135_030--Hb_000172_020 Hb_110587_010--Hb_135513_010 Hb_110587_010--Hb_005366_030 Hb_110587_010--Hb_000172_020 Hb_005096_020 Hb_005096_020 Hb_110587_010--Hb_005096_020 Hb_005366_030--Hb_135513_010 Hb_005366_030--Hb_081065_010 Hb_005366_030--Hb_000172_020 Hb_135513_010--Hb_000172_020 Hb_135513_010--Hb_005096_020 Hb_000172_020--Hb_005096_020 Hb_006856_060 Hb_006856_060 Hb_000172_020--Hb_006856_060 Hb_126916_010 Hb_126916_010 Hb_000172_020--Hb_126916_010 Hb_000302_050 Hb_000302_050 Hb_000172_020--Hb_000302_050 Hb_015183_050 Hb_015183_050 Hb_081065_010--Hb_015183_050 Hb_004961_010 Hb_004961_010 Hb_081065_010--Hb_004961_010 Hb_008289_020 Hb_008289_020 Hb_081065_010--Hb_008289_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.10712 0 1.51476 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis