Hb_081065_010

Information

Type -
Description -
Location Contig81065: 1782-2132
Sequence    

Annotation

kegg
ID pvu:PHAVU_001G084100g
description hypothetical protein
nr
ID XP_007161613.1
description hypothetical protein PHAVU_001G084100g, partial [Phaseolus vulgaris]
swissprot
ID -
description -
trembl
ID V7CTU4
description Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_001G084100g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_081065_010 0.0 - - hypothetical protein PHAVU_001G084100g, partial [Phaseolus vulgaris]
2 Hb_015183_050 0.0061726107 - - hypothetical protein JCGZ_24010 [Jatropha curcas]
3 Hb_005366_030 0.0140380498 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
4 Hb_019135_030 0.015672272 - - putative mitogen-activated protein kinase 1 [Populus trichocarpa]
5 Hb_004961_010 0.0160473721 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
6 Hb_008289_020 0.0170219362 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
7 Hb_081287_010 0.0172009368 - - PREDICTED: alpha-dioxygenase 2 [Jatropha curcas]
8 Hb_021485_010 0.0175553041 - - Integrase-type DNA-binding superfamily protein, putative [Theobroma cacao]
9 Hb_110587_010 0.0202473345 - - unnamed protein product [Coffea canephora]
10 Hb_135513_010 0.0237570513 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_012753_100 0.0280424799 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000172_020 0.0338687672 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Vitis vinifera]
13 Hb_005096_020 0.0366828194 - - PREDICTED: DIS3-like exonuclease 2-like isoform X1 [Citrus sinensis]
14 Hb_085910_010 0.0399094662 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
15 Hb_006856_060 0.0458453347 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
16 Hb_126916_010 0.0490086536 - - PREDICTED: putative receptor-like protein kinase At3g47110, partial [Jatropha curcas]
17 Hb_000302_050 0.0496287147 - - -
18 Hb_011045_020 0.0507662184 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
19 Hb_000770_020 0.0518881246 - - hypothetical protein POPTR_0001s39195g [Populus trichocarpa]
20 Hb_010374_010 0.0593752907 - - TMV resistance protein N, putative [Ricinus communis]

Gene co-expression network

sample Hb_081065_010 Hb_081065_010 Hb_015183_050 Hb_015183_050 Hb_081065_010--Hb_015183_050 Hb_005366_030 Hb_005366_030 Hb_081065_010--Hb_005366_030 Hb_019135_030 Hb_019135_030 Hb_081065_010--Hb_019135_030 Hb_004961_010 Hb_004961_010 Hb_081065_010--Hb_004961_010 Hb_008289_020 Hb_008289_020 Hb_081065_010--Hb_008289_020 Hb_081287_010 Hb_081287_010 Hb_081065_010--Hb_081287_010 Hb_015183_050--Hb_004961_010 Hb_015183_050--Hb_008289_020 Hb_021485_010 Hb_021485_010 Hb_015183_050--Hb_021485_010 Hb_015183_050--Hb_005366_030 Hb_015183_050--Hb_019135_030 Hb_005366_030--Hb_019135_030 Hb_005366_030--Hb_081287_010 Hb_110587_010 Hb_110587_010 Hb_005366_030--Hb_110587_010 Hb_135513_010 Hb_135513_010 Hb_005366_030--Hb_135513_010 Hb_000172_020 Hb_000172_020 Hb_005366_030--Hb_000172_020 Hb_019135_030--Hb_081287_010 Hb_019135_030--Hb_110587_010 Hb_019135_030--Hb_135513_010 Hb_019135_030--Hb_000172_020 Hb_004961_010--Hb_008289_020 Hb_004961_010--Hb_021485_010 Hb_012753_100 Hb_012753_100 Hb_004961_010--Hb_012753_100 Hb_085910_010 Hb_085910_010 Hb_004961_010--Hb_085910_010 Hb_008289_020--Hb_021485_010 Hb_008289_020--Hb_012753_100 Hb_008289_020--Hb_085910_010 Hb_081287_010--Hb_110587_010 Hb_081287_010--Hb_135513_010 Hb_081287_010--Hb_000172_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.335362 0 0.222011 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis