Hb_085910_010

Information

Type -
Description -
Location Contig85910: 2622-3512
Sequence    

Annotation

kegg
ID rcu:RCOM_0824170
description hypothetical protein
nr
ID XP_009613217.1
description PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID B9SIM6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0824170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_085910_010 0.0 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
2 Hb_012753_100 0.0118722333 - - conserved hypothetical protein [Ricinus communis]
3 Hb_021485_010 0.022360299 - - Integrase-type DNA-binding superfamily protein, putative [Theobroma cacao]
4 Hb_008289_020 0.02289362 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
5 Hb_004961_010 0.0238680753 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
6 Hb_010028_010 0.0315972437 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
7 Hb_015183_050 0.033740084 - - hypothetical protein JCGZ_24010 [Jatropha curcas]
8 Hb_007235_040 0.0349843928 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_081065_010 0.0399094662 - - hypothetical protein PHAVU_001G084100g, partial [Phaseolus vulgaris]
10 Hb_005366_030 0.053935945 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
11 Hb_019135_030 0.055568444 - - putative mitogen-activated protein kinase 1 [Populus trichocarpa]
12 Hb_081287_010 0.0570954267 - - PREDICTED: alpha-dioxygenase 2 [Jatropha curcas]
13 Hb_110587_010 0.0601382706 - - unnamed protein product [Coffea canephora]
14 Hb_000206_280 0.0625193089 - - Uncharacterized protein TCM_031897 [Theobroma cacao]
15 Hb_135513_010 0.0636435618 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_023502_010 0.0652484853 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
17 Hb_000172_020 0.0737405635 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Vitis vinifera]
18 Hb_091826_010 0.0764965965 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
19 Hb_005096_020 0.0765500071 - - PREDICTED: DIS3-like exonuclease 2-like isoform X1 [Citrus sinensis]
20 Hb_006856_060 0.0856959852 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]

Gene co-expression network

sample Hb_085910_010 Hb_085910_010 Hb_012753_100 Hb_012753_100 Hb_085910_010--Hb_012753_100 Hb_021485_010 Hb_021485_010 Hb_085910_010--Hb_021485_010 Hb_008289_020 Hb_008289_020 Hb_085910_010--Hb_008289_020 Hb_004961_010 Hb_004961_010 Hb_085910_010--Hb_004961_010 Hb_010028_010 Hb_010028_010 Hb_085910_010--Hb_010028_010 Hb_015183_050 Hb_015183_050 Hb_085910_010--Hb_015183_050 Hb_012753_100--Hb_021485_010 Hb_012753_100--Hb_008289_020 Hb_012753_100--Hb_004961_010 Hb_012753_100--Hb_015183_050 Hb_081065_010 Hb_081065_010 Hb_012753_100--Hb_081065_010 Hb_021485_010--Hb_008289_020 Hb_021485_010--Hb_004961_010 Hb_021485_010--Hb_015183_050 Hb_021485_010--Hb_081065_010 Hb_008289_020--Hb_004961_010 Hb_008289_020--Hb_015183_050 Hb_008289_020--Hb_081065_010 Hb_004961_010--Hb_015183_050 Hb_004961_010--Hb_081065_010 Hb_007235_040 Hb_007235_040 Hb_010028_010--Hb_007235_040 Hb_000206_280 Hb_000206_280 Hb_010028_010--Hb_000206_280 Hb_023502_010 Hb_023502_010 Hb_010028_010--Hb_023502_010 Hb_010028_010--Hb_012753_100 Hb_010028_010--Hb_021485_010 Hb_015183_050--Hb_081065_010 Hb_005366_030 Hb_005366_030 Hb_015183_050--Hb_005366_030 Hb_019135_030 Hb_019135_030 Hb_015183_050--Hb_019135_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0465414 0 0.0253723 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis