Hb_012753_100

Information

Type -
Description -
Location Contig12753: 43072-44970
Sequence    

Annotation

kegg
ID rcu:RCOM_1594460
description hypothetical protein
nr
ID XP_002510397.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID B2HIL4
description Long-chain-fatty-acid--AMP ligase FadD29 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=fadD29 PE=3 SV=1
trembl
ID B9R7V4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1594460 PE=4 SV=1
Gene Ontology
ID GO:0016874
description disco-interacting protein 2 homolog b-a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012753_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_021485_010 0.0104891809 - - Integrase-type DNA-binding superfamily protein, putative [Theobroma cacao]
3 Hb_008289_020 0.0110225859 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
4 Hb_085910_010 0.0118722333 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
5 Hb_004961_010 0.0119972018 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
6 Hb_015183_050 0.0218713273 - - hypothetical protein JCGZ_24010 [Jatropha curcas]
7 Hb_081065_010 0.0280424799 - - hypothetical protein PHAVU_001G084100g, partial [Phaseolus vulgaris]
8 Hb_005366_030 0.0420742377 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
9 Hb_010028_010 0.0434626324 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
10 Hb_019135_030 0.0437074625 - - putative mitogen-activated protein kinase 1 [Populus trichocarpa]
11 Hb_081287_010 0.045235145 - - PREDICTED: alpha-dioxygenase 2 [Jatropha curcas]
12 Hb_007235_040 0.0468484316 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_110587_010 0.048279443 - - unnamed protein product [Coffea canephora]
14 Hb_135513_010 0.0517865072 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_000172_020 0.0618891969 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Vitis vinifera]
16 Hb_005096_020 0.064700375 - - PREDICTED: DIS3-like exonuclease 2-like isoform X1 [Citrus sinensis]
17 Hb_091826_010 0.0724822762 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
18 Hb_006856_060 0.0738524517 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
19 Hb_000206_280 0.0743676696 - - Uncharacterized protein TCM_031897 [Theobroma cacao]
20 Hb_126916_010 0.0770117857 - - PREDICTED: putative receptor-like protein kinase At3g47110, partial [Jatropha curcas]

Gene co-expression network

sample Hb_012753_100 Hb_012753_100 Hb_021485_010 Hb_021485_010 Hb_012753_100--Hb_021485_010 Hb_008289_020 Hb_008289_020 Hb_012753_100--Hb_008289_020 Hb_085910_010 Hb_085910_010 Hb_012753_100--Hb_085910_010 Hb_004961_010 Hb_004961_010 Hb_012753_100--Hb_004961_010 Hb_015183_050 Hb_015183_050 Hb_012753_100--Hb_015183_050 Hb_081065_010 Hb_081065_010 Hb_012753_100--Hb_081065_010 Hb_021485_010--Hb_008289_020 Hb_021485_010--Hb_004961_010 Hb_021485_010--Hb_015183_050 Hb_021485_010--Hb_081065_010 Hb_021485_010--Hb_085910_010 Hb_008289_020--Hb_004961_010 Hb_008289_020--Hb_015183_050 Hb_008289_020--Hb_081065_010 Hb_008289_020--Hb_085910_010 Hb_085910_010--Hb_004961_010 Hb_010028_010 Hb_010028_010 Hb_085910_010--Hb_010028_010 Hb_085910_010--Hb_015183_050 Hb_004961_010--Hb_015183_050 Hb_004961_010--Hb_081065_010 Hb_015183_050--Hb_081065_010 Hb_005366_030 Hb_005366_030 Hb_015183_050--Hb_005366_030 Hb_019135_030 Hb_019135_030 Hb_015183_050--Hb_019135_030 Hb_081065_010--Hb_005366_030 Hb_081065_010--Hb_019135_030 Hb_081287_010 Hb_081287_010 Hb_081065_010--Hb_081287_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0260505 0 0.0150536 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis