Hb_004961_010

Information

Type -
Description -
Location Contig4961: 19115-20442
Sequence    

Annotation

kegg
ID pop:POPTR_0914s00200g
description hypothetical protein
nr
ID XP_012086248.1
description PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
swissprot
ID P26337
description Putative adenylate cyclase regulatory protein OS=Trypanosoma equiperdum GN=ESAG8C PE=2 SV=1
trembl
ID A0A067K2K1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21067 PE=4 SV=1
Gene Ontology
ID GO:0005515
description disease resistance protein rga1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004961_010 0.0 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
2 Hb_008289_020 0.0009746665 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
3 Hb_021485_010 0.0015080955 - - Integrase-type DNA-binding superfamily protein, putative [Theobroma cacao]
4 Hb_015183_050 0.009875135 - - hypothetical protein JCGZ_24010 [Jatropha curcas]
5 Hb_012753_100 0.0119972018 - - conserved hypothetical protein [Ricinus communis]
6 Hb_081065_010 0.0160473721 - - hypothetical protein PHAVU_001G084100g, partial [Phaseolus vulgaris]
7 Hb_085910_010 0.0238680753 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
8 Hb_005366_030 0.0300828674 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
9 Hb_019135_030 0.0317166403 - - putative mitogen-activated protein kinase 1 [Populus trichocarpa]
10 Hb_081287_010 0.0332448566 - - PREDICTED: alpha-dioxygenase 2 [Jatropha curcas]
11 Hb_110587_010 0.036290279 - - unnamed protein product [Coffea canephora]
12 Hb_135513_010 0.0397987383 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_000172_020 0.0499060372 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Vitis vinifera]
14 Hb_005096_020 0.0527186523 - - PREDICTED: DIS3-like exonuclease 2-like isoform X1 [Citrus sinensis]
15 Hb_010028_010 0.0554479566 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
16 Hb_007235_040 0.0588320085 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_006856_060 0.0618758681 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
18 Hb_126916_010 0.0650371384 - - PREDICTED: putative receptor-like protein kinase At3g47110, partial [Jatropha curcas]
19 Hb_000302_050 0.0656567849 - - -
20 Hb_011045_020 0.0667935168 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_004961_010 Hb_004961_010 Hb_008289_020 Hb_008289_020 Hb_004961_010--Hb_008289_020 Hb_021485_010 Hb_021485_010 Hb_004961_010--Hb_021485_010 Hb_015183_050 Hb_015183_050 Hb_004961_010--Hb_015183_050 Hb_012753_100 Hb_012753_100 Hb_004961_010--Hb_012753_100 Hb_081065_010 Hb_081065_010 Hb_004961_010--Hb_081065_010 Hb_085910_010 Hb_085910_010 Hb_004961_010--Hb_085910_010 Hb_008289_020--Hb_021485_010 Hb_008289_020--Hb_015183_050 Hb_008289_020--Hb_012753_100 Hb_008289_020--Hb_081065_010 Hb_008289_020--Hb_085910_010 Hb_021485_010--Hb_012753_100 Hb_021485_010--Hb_015183_050 Hb_021485_010--Hb_081065_010 Hb_021485_010--Hb_085910_010 Hb_015183_050--Hb_081065_010 Hb_005366_030 Hb_005366_030 Hb_015183_050--Hb_005366_030 Hb_019135_030 Hb_019135_030 Hb_015183_050--Hb_019135_030 Hb_012753_100--Hb_085910_010 Hb_012753_100--Hb_015183_050 Hb_012753_100--Hb_081065_010 Hb_081065_010--Hb_005366_030 Hb_081065_010--Hb_019135_030 Hb_081287_010 Hb_081287_010 Hb_081065_010--Hb_081287_010 Hb_010028_010 Hb_010028_010 Hb_085910_010--Hb_010028_010 Hb_085910_010--Hb_015183_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0456291 0 0.0279536 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis