Hb_000206_280

Information

Type -
Description -
Location Contig206: 340547-345147
Sequence    

Annotation

kegg
ID tcc:TCM_031897
description hypothetical protein
nr
ID XP_007021828.1
description Uncharacterized protein TCM_031897 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061F8Y8
description Uncharacterized protein OS=Theobroma cacao GN=TCM_031897 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000206_280 0.0 - - Uncharacterized protein TCM_031897 [Theobroma cacao]
2 Hb_023502_010 0.0027344174 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
3 Hb_007235_040 0.0275622954 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_010028_010 0.0309497307 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
5 Hb_003938_150 0.0366844617 - - hypothetical protein JCGZ_17711 [Jatropha curcas]
6 Hb_007556_010 0.0383195444 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X2 [Populus euphratica]
7 Hb_070850_010 0.0393472483 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B-like [Jatropha curcas]
8 Hb_009230_050 0.0612037219 - - PREDICTED: transcription factor bHLH113-like [Jatropha curcas]
9 Hb_085910_010 0.0625193089 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
10 Hb_008296_010 0.0665950635 - - -
11 Hb_001784_010 0.0680771042 - - nutrient reservoir, putative [Ricinus communis]
12 Hb_013862_010 0.0726946494 - - PREDICTED: uncharacterized protein LOC105650642 [Jatropha curcas]
13 Hb_010615_010 0.0735725572 - - PREDICTED: reticuline oxidase-like protein [Jatropha curcas]
14 Hb_012753_100 0.0743676696 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000103_280 0.0788762024 transcription factor TF Family: HSF Heat shock factor protein HSF30, putative [Ricinus communis]
16 Hb_021485_010 0.0848288488 - - Integrase-type DNA-binding superfamily protein, putative [Theobroma cacao]
17 Hb_008289_020 0.0853606605 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
18 Hb_004961_010 0.0863323229 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
19 Hb_015183_050 0.0961735042 - - hypothetical protein JCGZ_24010 [Jatropha curcas]
20 Hb_092044_010 0.1009136773 - - PREDICTED: uncharacterized protein LOC105636336 [Jatropha curcas]

Gene co-expression network

sample Hb_000206_280 Hb_000206_280 Hb_023502_010 Hb_023502_010 Hb_000206_280--Hb_023502_010 Hb_007235_040 Hb_007235_040 Hb_000206_280--Hb_007235_040 Hb_010028_010 Hb_010028_010 Hb_000206_280--Hb_010028_010 Hb_003938_150 Hb_003938_150 Hb_000206_280--Hb_003938_150 Hb_007556_010 Hb_007556_010 Hb_000206_280--Hb_007556_010 Hb_070850_010 Hb_070850_010 Hb_000206_280--Hb_070850_010 Hb_023502_010--Hb_007235_040 Hb_023502_010--Hb_010028_010 Hb_023502_010--Hb_003938_150 Hb_023502_010--Hb_007556_010 Hb_023502_010--Hb_070850_010 Hb_007235_040--Hb_010028_010 Hb_085910_010 Hb_085910_010 Hb_007235_040--Hb_085910_010 Hb_012753_100 Hb_012753_100 Hb_007235_040--Hb_012753_100 Hb_021485_010 Hb_021485_010 Hb_007235_040--Hb_021485_010 Hb_010028_010--Hb_085910_010 Hb_010028_010--Hb_012753_100 Hb_010028_010--Hb_021485_010 Hb_003938_150--Hb_007556_010 Hb_003938_150--Hb_070850_010 Hb_009230_050 Hb_009230_050 Hb_003938_150--Hb_009230_050 Hb_008296_010 Hb_008296_010 Hb_003938_150--Hb_008296_010 Hb_001784_010 Hb_001784_010 Hb_003938_150--Hb_001784_010 Hb_007556_010--Hb_070850_010 Hb_007556_010--Hb_009230_050 Hb_007556_010--Hb_008296_010 Hb_007556_010--Hb_001784_010 Hb_010615_010 Hb_010615_010 Hb_007556_010--Hb_010615_010 Hb_070850_010--Hb_009230_050 Hb_070850_010--Hb_008296_010 Hb_070850_010--Hb_001784_010 Hb_070850_010--Hb_010615_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.120601 0 0.0479005 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis