Hb_007235_040

Information

Type -
Description -
Location Contig7235: 56562-59351
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007235_040 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_010028_010 0.0033887957 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
3 Hb_000206_280 0.0275622954 - - Uncharacterized protein TCM_031897 [Theobroma cacao]
4 Hb_023502_010 0.0302955945 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
5 Hb_085910_010 0.0349843928 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
6 Hb_012753_100 0.0468484316 - - conserved hypothetical protein [Ricinus communis]
7 Hb_021485_010 0.0573259895 - - Integrase-type DNA-binding superfamily protein, putative [Theobroma cacao]
8 Hb_008289_020 0.0578586959 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
9 Hb_004961_010 0.0588320085 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
10 Hb_003938_150 0.0642135824 - - hypothetical protein JCGZ_17711 [Jatropha curcas]
11 Hb_007556_010 0.065846231 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X2 [Populus euphratica]
12 Hb_070850_010 0.0668723612 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B-like [Jatropha curcas]
13 Hb_015183_050 0.0686910079 - - hypothetical protein JCGZ_24010 [Jatropha curcas]
14 Hb_081065_010 0.0748509553 - - hypothetical protein PHAVU_001G084100g, partial [Phaseolus vulgaris]
15 Hb_009230_050 0.0886871004 - - PREDICTED: transcription factor bHLH113-like [Jatropha curcas]
16 Hb_005366_030 0.0888523386 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
17 Hb_019135_030 0.0904815934 - - putative mitogen-activated protein kinase 1 [Populus trichocarpa]
18 Hb_013862_010 0.0916242177 - - PREDICTED: uncharacterized protein LOC105650642 [Jatropha curcas]
19 Hb_081287_010 0.0920054814 - - PREDICTED: alpha-dioxygenase 2 [Jatropha curcas]
20 Hb_008296_010 0.0940656297 - - -

Gene co-expression network

sample Hb_007235_040 Hb_007235_040 Hb_010028_010 Hb_010028_010 Hb_007235_040--Hb_010028_010 Hb_000206_280 Hb_000206_280 Hb_007235_040--Hb_000206_280 Hb_023502_010 Hb_023502_010 Hb_007235_040--Hb_023502_010 Hb_085910_010 Hb_085910_010 Hb_007235_040--Hb_085910_010 Hb_012753_100 Hb_012753_100 Hb_007235_040--Hb_012753_100 Hb_021485_010 Hb_021485_010 Hb_007235_040--Hb_021485_010 Hb_010028_010--Hb_000206_280 Hb_010028_010--Hb_085910_010 Hb_010028_010--Hb_023502_010 Hb_010028_010--Hb_012753_100 Hb_010028_010--Hb_021485_010 Hb_000206_280--Hb_023502_010 Hb_003938_150 Hb_003938_150 Hb_000206_280--Hb_003938_150 Hb_007556_010 Hb_007556_010 Hb_000206_280--Hb_007556_010 Hb_070850_010 Hb_070850_010 Hb_000206_280--Hb_070850_010 Hb_023502_010--Hb_003938_150 Hb_023502_010--Hb_007556_010 Hb_023502_010--Hb_070850_010 Hb_085910_010--Hb_012753_100 Hb_085910_010--Hb_021485_010 Hb_008289_020 Hb_008289_020 Hb_085910_010--Hb_008289_020 Hb_004961_010 Hb_004961_010 Hb_085910_010--Hb_004961_010 Hb_015183_050 Hb_015183_050 Hb_085910_010--Hb_015183_050 Hb_012753_100--Hb_021485_010 Hb_012753_100--Hb_008289_020 Hb_012753_100--Hb_004961_010 Hb_012753_100--Hb_015183_050 Hb_081065_010 Hb_081065_010 Hb_012753_100--Hb_081065_010 Hb_021485_010--Hb_008289_020 Hb_021485_010--Hb_004961_010 Hb_021485_010--Hb_015183_050 Hb_021485_010--Hb_081065_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0127678 0 0.0058438 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis