Hb_004195_030

Information

Type -
Description -
Location Contig4195: 28329-29691
Sequence    

Annotation

kegg
ID pop:POPTR_0006s17880g
description hypothetical protein
nr
ID XP_006381775.1
description hypothetical protein POPTR_0006s17880g, partial [Populus trichocarpa]
swissprot
ID O64470
description Spermidine hydroxycinnamoyl transferase OS=Arabidopsis thaliana GN=SHT PE=1 SV=1
trembl
ID U5GDT6
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0006s17880g PE=4 SV=1
Gene Ontology
ID GO:0016410
description spermidine hydroxycinnamoyl transferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004195_030 0.0 - - hypothetical protein POPTR_0006s17880g, partial [Populus trichocarpa]
2 Hb_131957_010 0.1265605229 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
3 Hb_005396_110 0.127813551 - - conserved hypothetical protein [Ricinus communis]
4 Hb_132517_010 0.13412303 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like isoform X3 [Populus euphratica]
5 Hb_087468_010 0.1373689298 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
6 Hb_008554_010 0.1401761895 - - -
7 Hb_160459_030 0.1405746983 - - PREDICTED: uncharacterized protein LOC105648122 [Jatropha curcas]
8 Hb_001131_100 0.1410205312 - - PREDICTED: uncharacterized protein LOC105638386 [Jatropha curcas]
9 Hb_000111_150 0.1525995579 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
10 Hb_000509_040 0.1541786834 - - hypothetical protein VITISV_009716 [Vitis vinifera]
11 Hb_001059_050 0.1587884112 - - PREDICTED: putative F-box/LRR-repeat protein At3g18150 [Jatropha curcas]
12 Hb_151616_010 0.1624652241 - - -
13 Hb_001131_070 0.1667004923 - - PREDICTED: uncharacterized protein LOC105638217 [Jatropha curcas]
14 Hb_005389_090 0.1686890488 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA27, putative [Ricinus communis]
15 Hb_001897_030 0.1691159628 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
16 Hb_055993_010 0.1719774967 - - PREDICTED: uncharacterized protein LOC104883809 [Beta vulgaris subsp. vulgaris]
17 Hb_001227_010 0.1735614511 transcription factor TF Family: TCP hypothetical protein POPTR_0015s03140g [Populus trichocarpa]
18 Hb_024857_010 0.1748891305 - - glutaredoxin 2.1 [Hevea brasiliensis]
19 Hb_000991_110 0.1754526651 - - PREDICTED: uncharacterized protein LOC105636336 [Jatropha curcas]
20 Hb_001610_050 0.1772398259 - - PREDICTED: subtilisin-like protease-like [Solanum tuberosum]

Gene co-expression network

sample Hb_004195_030 Hb_004195_030 Hb_131957_010 Hb_131957_010 Hb_004195_030--Hb_131957_010 Hb_005396_110 Hb_005396_110 Hb_004195_030--Hb_005396_110 Hb_132517_010 Hb_132517_010 Hb_004195_030--Hb_132517_010 Hb_087468_010 Hb_087468_010 Hb_004195_030--Hb_087468_010 Hb_008554_010 Hb_008554_010 Hb_004195_030--Hb_008554_010 Hb_160459_030 Hb_160459_030 Hb_004195_030--Hb_160459_030 Hb_004458_010 Hb_004458_010 Hb_131957_010--Hb_004458_010 Hb_000318_320 Hb_000318_320 Hb_131957_010--Hb_000318_320 Hb_008725_190 Hb_008725_190 Hb_131957_010--Hb_008725_190 Hb_131957_010--Hb_132517_010 Hb_001227_010 Hb_001227_010 Hb_131957_010--Hb_001227_010 Hb_000509_040 Hb_000509_040 Hb_005396_110--Hb_000509_040 Hb_005396_110--Hb_132517_010 Hb_000111_150 Hb_000111_150 Hb_005396_110--Hb_000111_150 Hb_001059_050 Hb_001059_050 Hb_005396_110--Hb_001059_050 Hb_001897_030 Hb_001897_030 Hb_005396_110--Hb_001897_030 Hb_005396_110--Hb_087468_010 Hb_005389_090 Hb_005389_090 Hb_132517_010--Hb_005389_090 Hb_132517_010--Hb_001059_050 Hb_132517_010--Hb_001897_030 Hb_151616_010 Hb_151616_010 Hb_132517_010--Hb_151616_010 Hb_132517_010--Hb_001227_010 Hb_024857_010 Hb_024857_010 Hb_087468_010--Hb_024857_010 Hb_087468_010--Hb_000111_150 Hb_000252_190 Hb_000252_190 Hb_087468_010--Hb_000252_190 Hb_087468_010--Hb_001897_030 Hb_087468_010--Hb_132517_010 Hb_001373_080 Hb_001373_080 Hb_008554_010--Hb_001373_080 Hb_001131_070 Hb_001131_070 Hb_008554_010--Hb_001131_070 Hb_002461_080 Hb_002461_080 Hb_008554_010--Hb_002461_080 Hb_000431_180 Hb_000431_180 Hb_008554_010--Hb_000431_180 Hb_000331_690 Hb_000331_690 Hb_008554_010--Hb_000331_690 Hb_000181_450 Hb_000181_450 Hb_160459_030--Hb_000181_450 Hb_007313_050 Hb_007313_050 Hb_160459_030--Hb_007313_050 Hb_021443_020 Hb_021443_020 Hb_160459_030--Hb_021443_020 Hb_001934_010 Hb_001934_010 Hb_160459_030--Hb_001934_010 Hb_160459_030--Hb_001059_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.327935 0.027031 0.201259 0 0.0178688
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0370043 0

CAGE analysis