Hb_000331_690

Information

Type -
Description -
Location Contig331: 521424-522560
Sequence    

Annotation

kegg
ID rcu:RCOM_1507870
description F-box and wd40 domain protein, putative
nr
ID XP_012080518.1
description PREDICTED: F-box/WD repeat-containing protein 11-like [Jatropha curcas]
swissprot
ID Q09990
description F-box/WD repeat-containing protein lin-23 OS=Caenorhabditis elegans GN=lin-23 PE=1 SV=2
trembl
ID A0A067K450
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11377 PE=4 SV=1
Gene Ontology
ID GO:0005515
description transducin wd40 repeat-like superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_690 0.0 - - PREDICTED: F-box/WD repeat-containing protein 11-like [Jatropha curcas]
2 Hb_017417_020 0.1074625453 - - DUF26 domain-containing protein 2 precursor, putative [Ricinus communis]
3 Hb_069232_010 0.1176706123 - - PREDICTED: 60S ribosomal protein L37-3-like [Vitis vinifera]
4 Hb_001131_100 0.1337526415 - - PREDICTED: uncharacterized protein LOC105638386 [Jatropha curcas]
5 Hb_000270_010 0.1359500019 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005380_030 0.1485284982 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase B120 isoform X2 [Jatropha curcas]
7 Hb_008554_010 0.1558945731 - - -
8 Hb_081448_010 0.1571323534 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
9 Hb_000431_180 0.1585463458 - - PREDICTED: peroxidase 55 [Jatropha curcas]
10 Hb_004089_010 0.1633345642 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
11 Hb_000703_320 0.1645150283 - - receptor-kinase, putative [Ricinus communis]
12 Hb_005203_010 0.1684247596 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
13 Hb_001373_080 0.1757229352 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
14 Hb_005147_020 0.1812377943 - - PREDICTED: uncharacterized protein LOC105629671 [Jatropha curcas]
15 Hb_002241_020 0.1836538157 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
16 Hb_000431_030 0.1885921494 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
17 Hb_027445_080 0.1911504012 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]
18 Hb_002110_210 0.1932681426 - - purine transporter, putative [Ricinus communis]
19 Hb_000128_010 0.1951590087 - - dimethylaniline monooxygenase, putative [Ricinus communis]
20 Hb_001691_190 0.1974598756 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000331_690 Hb_000331_690 Hb_017417_020 Hb_017417_020 Hb_000331_690--Hb_017417_020 Hb_069232_010 Hb_069232_010 Hb_000331_690--Hb_069232_010 Hb_001131_100 Hb_001131_100 Hb_000331_690--Hb_001131_100 Hb_000270_010 Hb_000270_010 Hb_000331_690--Hb_000270_010 Hb_005380_030 Hb_005380_030 Hb_000331_690--Hb_005380_030 Hb_008554_010 Hb_008554_010 Hb_000331_690--Hb_008554_010 Hb_017417_020--Hb_069232_010 Hb_017417_020--Hb_000270_010 Hb_081448_010 Hb_081448_010 Hb_017417_020--Hb_081448_010 Hb_000128_010 Hb_000128_010 Hb_017417_020--Hb_000128_010 Hb_000431_180 Hb_000431_180 Hb_017417_020--Hb_000431_180 Hb_069232_010--Hb_081448_010 Hb_000703_320 Hb_000703_320 Hb_069232_010--Hb_000703_320 Hb_069232_010--Hb_000270_010 Hb_005203_010 Hb_005203_010 Hb_069232_010--Hb_005203_010 Hb_001131_100--Hb_000270_010 Hb_004089_010 Hb_004089_010 Hb_001131_100--Hb_004089_010 Hb_011928_030 Hb_011928_030 Hb_001131_100--Hb_011928_030 Hb_004195_030 Hb_004195_030 Hb_001131_100--Hb_004195_030 Hb_133646_010 Hb_133646_010 Hb_001131_100--Hb_133646_010 Hb_000270_010--Hb_000431_180 Hb_001691_190 Hb_001691_190 Hb_000270_010--Hb_001691_190 Hb_000270_010--Hb_011928_030 Hb_005380_030--Hb_000703_320 Hb_002110_210 Hb_002110_210 Hb_005380_030--Hb_002110_210 Hb_002241_020 Hb_002241_020 Hb_005380_030--Hb_002241_020 Hb_005147_020 Hb_005147_020 Hb_005380_030--Hb_005147_020 Hb_002248_090 Hb_002248_090 Hb_005380_030--Hb_002248_090 Hb_002735_010 Hb_002735_010 Hb_005380_030--Hb_002735_010 Hb_001373_080 Hb_001373_080 Hb_008554_010--Hb_001373_080 Hb_008554_010--Hb_004195_030 Hb_001131_070 Hb_001131_070 Hb_008554_010--Hb_001131_070 Hb_002461_080 Hb_002461_080 Hb_008554_010--Hb_002461_080 Hb_008554_010--Hb_000431_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.652914 0 0.274529 0 0.020142
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.163856 0

CAGE analysis