Hb_000661_010

Information

Type -
Description -
Location Contig661: 2353-8117
Sequence    

Annotation

kegg
ID tcc:TCM_020387
description Peroxisomal 3-ketoacyl-CoA thiolase 3 isoform 1
nr
ID AFJ74324.1
description peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
swissprot
ID Q56WD9
description 3-ketoacyl-CoA thiolase 2, peroxisomal OS=Arabidopsis thaliana GN=PED1 PE=1 SV=2
trembl
ID A0A061EK03
description Peroxisomal 3-ketoacyl-CoA thiolase 3 isoform 1 OS=Theobroma cacao GN=TCM_020387 PE=3 SV=1
Gene Ontology
ID GO:0005730
description 3-ketoacyl- thiolase peroxisomal

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52942: 3805-4319
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000661_010 0.0 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
2 Hb_000777_020 0.1349067762 - - PREDICTED: 3-ketoacyl-CoA synthase 11 [Jatropha curcas]
3 Hb_005389_090 0.1354508354 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA27, putative [Ricinus communis]
4 Hb_009620_010 0.1499785518 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
5 Hb_010142_040 0.1543704876 - - PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
6 Hb_132517_010 0.1547748246 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like isoform X3 [Populus euphratica]
7 Hb_008725_190 0.1605547466 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 5-like [Jatropha curcas]
8 Hb_024357_010 0.1618144179 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
9 Hb_006550_010 0.1664080587 - - PREDICTED: vacuolar amino acid transporter 1 [Eucalyptus grandis]
10 Hb_001195_650 0.1664493827 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
11 Hb_001213_140 0.16799506 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
12 Hb_000827_090 0.1689483856 - - PREDICTED: uncharacterized protein LOC103714121 [Phoenix dactylifera]
13 Hb_001787_070 0.1708345548 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Camelina sativa]
14 Hb_001897_030 0.1710869569 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
15 Hb_027905_010 0.1713150238 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
16 Hb_000111_200 0.1747033373 - - PREDICTED: CYSTM1 family protein A-like [Cucumis melo]
17 Hb_048937_010 0.1748771524 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1 [Nelumbo nucifera]
18 Hb_000000_280 0.1757828315 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003864_020 0.1767287232 - - kinase, putative [Ricinus communis]
20 Hb_010012_020 0.1778885311 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000661_010 Hb_000661_010 Hb_000777_020 Hb_000777_020 Hb_000661_010--Hb_000777_020 Hb_005389_090 Hb_005389_090 Hb_000661_010--Hb_005389_090 Hb_009620_010 Hb_009620_010 Hb_000661_010--Hb_009620_010 Hb_010142_040 Hb_010142_040 Hb_000661_010--Hb_010142_040 Hb_132517_010 Hb_132517_010 Hb_000661_010--Hb_132517_010 Hb_008725_190 Hb_008725_190 Hb_000661_010--Hb_008725_190 Hb_001213_140 Hb_001213_140 Hb_000777_020--Hb_001213_140 Hb_000827_090 Hb_000827_090 Hb_000777_020--Hb_000827_090 Hb_027905_010 Hb_027905_010 Hb_000777_020--Hb_027905_010 Hb_000777_020--Hb_010142_040 Hb_001195_650 Hb_001195_650 Hb_000777_020--Hb_001195_650 Hb_000777_020--Hb_005389_090 Hb_005389_090--Hb_132517_010 Hb_001897_030 Hb_001897_030 Hb_005389_090--Hb_001897_030 Hb_006573_060 Hb_006573_060 Hb_005389_090--Hb_006573_060 Hb_000991_110 Hb_000991_110 Hb_005389_090--Hb_000991_110 Hb_007313_050 Hb_007313_050 Hb_005389_090--Hb_007313_050 Hb_005396_110 Hb_005396_110 Hb_005389_090--Hb_005396_110 Hb_002420_030 Hb_002420_030 Hb_009620_010--Hb_002420_030 Hb_001957_050 Hb_001957_050 Hb_009620_010--Hb_001957_050 Hb_043115_010 Hb_043115_010 Hb_009620_010--Hb_043115_010 Hb_039410_010 Hb_039410_010 Hb_009620_010--Hb_039410_010 Hb_002422_010 Hb_002422_010 Hb_009620_010--Hb_002422_010 Hb_010012_020 Hb_010012_020 Hb_009620_010--Hb_010012_020 Hb_010142_040--Hb_000827_090 Hb_032920_040 Hb_032920_040 Hb_010142_040--Hb_032920_040 Hb_010142_040--Hb_001213_140 Hb_010142_040--Hb_027905_010 Hb_000221_280 Hb_000221_280 Hb_010142_040--Hb_000221_280 Hb_132517_010--Hb_005396_110 Hb_001059_050 Hb_001059_050 Hb_132517_010--Hb_001059_050 Hb_132517_010--Hb_001897_030 Hb_151616_010 Hb_151616_010 Hb_132517_010--Hb_151616_010 Hb_001227_010 Hb_001227_010 Hb_132517_010--Hb_001227_010 Hb_003800_010 Hb_003800_010 Hb_008725_190--Hb_003800_010 Hb_008725_190--Hb_001227_010 Hb_007304_100 Hb_007304_100 Hb_008725_190--Hb_007304_100 Hb_131957_010 Hb_131957_010 Hb_008725_190--Hb_131957_010 Hb_008725_190--Hb_043115_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0226723 2.35444 0.614823 2.13283 0.0325824 0.0332043
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0257864 0.101443 0 0.161632 0

CAGE analysis