Hb_055993_010

Information

Type -
Description -
Location Contig55993: 876-1475
Sequence    

Annotation

kegg
ID bvg:104883809
description uncharacterized LOC104883809
nr
ID XP_010666673.1
description PREDICTED: uncharacterized protein LOC104883809 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID F4NCH2
description Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_055993_010 0.0 - - PREDICTED: uncharacterized protein LOC104883809 [Beta vulgaris subsp. vulgaris]
2 Hb_005687_060 0.1392950274 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X1 [Jatropha curcas]
3 Hb_160459_030 0.1559463232 - - PREDICTED: uncharacterized protein LOC105648122 [Jatropha curcas]
4 Hb_005183_010 0.1607595675 - - PREDICTED: probable calcium-binding protein CML17 [Malus domestica]
5 Hb_002639_120 0.1679202895 - - unnamed protein product [Vitis vinifera]
6 Hb_007304_100 0.1709817572 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Jatropha curcas]
7 Hb_004195_030 0.1719774967 - - hypothetical protein POPTR_0006s17880g, partial [Populus trichocarpa]
8 Hb_001610_050 0.1722611904 - - PREDICTED: subtilisin-like protease-like [Solanum tuberosum]
9 Hb_004586_230 0.1752257093 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005389_090 0.1764121088 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA27, putative [Ricinus communis]
11 Hb_002025_120 0.1774563359 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105634212 [Jatropha curcas]
12 Hb_131957_010 0.1779057332 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
13 Hb_012395_260 0.179668041 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
14 Hb_001934_010 0.1798115312 - - o-methyltransferase, putative [Ricinus communis]
15 Hb_000668_170 0.1816532815 - - sulfate transporter, putative [Ricinus communis]
16 Hb_004458_010 0.1819479362 - - PREDICTED: RING-H2 finger protein ATL78-like [Jatropha curcas]
17 Hb_001227_010 0.1828908564 transcription factor TF Family: TCP hypothetical protein POPTR_0015s03140g [Populus trichocarpa]
18 Hb_005643_080 0.1831454478 - - hypothetical protein POPTR_0001s12740g [Populus trichocarpa]
19 Hb_006550_010 0.1845670138 - - PREDICTED: vacuolar amino acid transporter 1 [Eucalyptus grandis]
20 Hb_000661_010 0.1845993296 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]

Gene co-expression network

sample Hb_055993_010 Hb_055993_010 Hb_005687_060 Hb_005687_060 Hb_055993_010--Hb_005687_060 Hb_160459_030 Hb_160459_030 Hb_055993_010--Hb_160459_030 Hb_005183_010 Hb_005183_010 Hb_055993_010--Hb_005183_010 Hb_002639_120 Hb_002639_120 Hb_055993_010--Hb_002639_120 Hb_007304_100 Hb_007304_100 Hb_055993_010--Hb_007304_100 Hb_004195_030 Hb_004195_030 Hb_055993_010--Hb_004195_030 Hb_001481_110 Hb_001481_110 Hb_005687_060--Hb_001481_110 Hb_000369_050 Hb_000369_050 Hb_005687_060--Hb_000369_050 Hb_005687_060--Hb_002639_120 Hb_005687_060--Hb_007304_100 Hb_000702_040 Hb_000702_040 Hb_005687_060--Hb_000702_040 Hb_001610_050 Hb_001610_050 Hb_005687_060--Hb_001610_050 Hb_000181_450 Hb_000181_450 Hb_160459_030--Hb_000181_450 Hb_160459_030--Hb_004195_030 Hb_007313_050 Hb_007313_050 Hb_160459_030--Hb_007313_050 Hb_021443_020 Hb_021443_020 Hb_160459_030--Hb_021443_020 Hb_001934_010 Hb_001934_010 Hb_160459_030--Hb_001934_010 Hb_001059_050 Hb_001059_050 Hb_160459_030--Hb_001059_050 Hb_000087_180 Hb_000087_180 Hb_005183_010--Hb_000087_180 Hb_012395_260 Hb_012395_260 Hb_005183_010--Hb_012395_260 Hb_004968_050 Hb_004968_050 Hb_005183_010--Hb_004968_050 Hb_000668_170 Hb_000668_170 Hb_005183_010--Hb_000668_170 Hb_000417_230 Hb_000417_230 Hb_005183_010--Hb_000417_230 Hb_017434_020 Hb_017434_020 Hb_005183_010--Hb_017434_020 Hb_006890_050 Hb_006890_050 Hb_002639_120--Hb_006890_050 Hb_151616_010 Hb_151616_010 Hb_002639_120--Hb_151616_010 Hb_002025_120 Hb_002025_120 Hb_002639_120--Hb_002025_120 Hb_001227_010 Hb_001227_010 Hb_002639_120--Hb_001227_010 Hb_000286_210 Hb_000286_210 Hb_002639_120--Hb_000286_210 Hb_002639_120--Hb_000702_040 Hb_007304_100--Hb_001481_110 Hb_000805_330 Hb_000805_330 Hb_007304_100--Hb_000805_330 Hb_008725_190 Hb_008725_190 Hb_007304_100--Hb_008725_190 Hb_003906_150 Hb_003906_150 Hb_007304_100--Hb_003906_150 Hb_131957_010 Hb_131957_010 Hb_004195_030--Hb_131957_010 Hb_005396_110 Hb_005396_110 Hb_004195_030--Hb_005396_110 Hb_132517_010 Hb_132517_010 Hb_004195_030--Hb_132517_010 Hb_087468_010 Hb_087468_010 Hb_004195_030--Hb_087468_010 Hb_008554_010 Hb_008554_010 Hb_004195_030--Hb_008554_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.24494 0.546627 4.40885 0.0408528 0.452702
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.079358 0 0.2929 0.153577

CAGE analysis