Hb_000369_050

Information

Type -
Description -
Location Contig369: 76693-79797
Sequence    

Annotation

kegg
ID tcc:TCM_001416
description Ankyrin repeat family protein, putative
nr
ID XP_007048310.1
description Ankyrin repeat family protein, putative [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061DJE0
description Ankyrin repeat family protein, putative OS=Theobroma cacao GN=TCM_001416 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000369_050 0.0 - - Ankyrin repeat family protein, putative [Theobroma cacao]
2 Hb_005687_060 0.1047428076 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X1 [Jatropha curcas]
3 Hb_001481_110 0.1061553933 - - S-adenosylmethionine synthetase 1 family protein [Populus trichocarpa]
4 Hb_103149_010 0.147473914 - - hypothetical protein CISIN_1g0397312mg, partial [Citrus sinensis]
5 Hb_001610_050 0.156008815 - - PREDICTED: subtilisin-like protease-like [Solanum tuberosum]
6 Hb_000702_040 0.1656936448 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
7 Hb_005892_010 0.1695498881 - - PREDICTED: uncharacterized protein LOC105632168 [Jatropha curcas]
8 Hb_004586_230 0.1695835813 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007304_100 0.1771167614 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Jatropha curcas]
10 Hb_009787_020 0.179096495 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]
11 Hb_001016_040 0.1821438573 transcription factor TF Family: Orphans PREDICTED: histidine kinase 1 isoform X1 [Jatropha curcas]
12 Hb_000733_090 0.1828687965 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
13 Hb_006890_050 0.1835532725 transcription factor TF Family: TCP PREDICTED: transcription factor CYCLOIDEA [Jatropha curcas]
14 Hb_000692_230 0.1836001189 - - phospholipase d delta, putative [Ricinus communis]
15 Hb_020301_010 0.1865006427 - - cytochrome P450, putative [Ricinus communis]
16 Hb_000922_290 0.1884580056 - - PREDICTED: probable boron transporter 2 [Jatropha curcas]
17 Hb_003371_210 0.1898143851 - - unnamed protein product [Vitis vinifera]
18 Hb_001195_650 0.1905852742 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
19 Hb_007885_120 0.1920003509 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]
20 Hb_002639_120 0.1920832897 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_000369_050 Hb_000369_050 Hb_005687_060 Hb_005687_060 Hb_000369_050--Hb_005687_060 Hb_001481_110 Hb_001481_110 Hb_000369_050--Hb_001481_110 Hb_103149_010 Hb_103149_010 Hb_000369_050--Hb_103149_010 Hb_001610_050 Hb_001610_050 Hb_000369_050--Hb_001610_050 Hb_000702_040 Hb_000702_040 Hb_000369_050--Hb_000702_040 Hb_005892_010 Hb_005892_010 Hb_000369_050--Hb_005892_010 Hb_005687_060--Hb_001481_110 Hb_002639_120 Hb_002639_120 Hb_005687_060--Hb_002639_120 Hb_007304_100 Hb_007304_100 Hb_005687_060--Hb_007304_100 Hb_005687_060--Hb_000702_040 Hb_005687_060--Hb_001610_050 Hb_001481_110--Hb_001610_050 Hb_006816_540 Hb_006816_540 Hb_001481_110--Hb_006816_540 Hb_001481_110--Hb_007304_100 Hb_000987_080 Hb_000987_080 Hb_001481_110--Hb_000987_080 Hb_000604_050 Hb_000604_050 Hb_103149_010--Hb_000604_050 Hb_000733_090 Hb_000733_090 Hb_103149_010--Hb_000733_090 Hb_103149_010--Hb_000702_040 Hb_004586_230 Hb_004586_230 Hb_103149_010--Hb_004586_230 Hb_001016_040 Hb_001016_040 Hb_103149_010--Hb_001016_040 Hb_003939_090 Hb_003939_090 Hb_103149_010--Hb_003939_090 Hb_001610_050--Hb_000702_040 Hb_021443_020 Hb_021443_020 Hb_001610_050--Hb_021443_020 Hb_001610_050--Hb_005892_010 Hb_001610_050--Hb_002639_120 Hb_006890_050 Hb_006890_050 Hb_001610_050--Hb_006890_050 Hb_001227_010 Hb_001227_010 Hb_001610_050--Hb_001227_010 Hb_000702_040--Hb_004586_230 Hb_001587_220 Hb_001587_220 Hb_000702_040--Hb_001587_220 Hb_000702_040--Hb_002639_120 Hb_000702_040--Hb_006890_050 Hb_000702_040--Hb_005892_010 Hb_000922_290 Hb_000922_290 Hb_005892_010--Hb_000922_290 Hb_050898_010 Hb_050898_010 Hb_005892_010--Hb_050898_010 Hb_005892_010--Hb_001587_220 Hb_000137_030 Hb_000137_030 Hb_005892_010--Hb_000137_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.017099 0.726368 0.0393835 0.834466 0 0.029906
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0388268 0.0152758 0 0.121402 0.0972104

CAGE analysis