Hb_001610_050

Information

Type -
Description -
Location Contig1610: 61091-68724
Sequence    

Annotation

kegg
ID sot:102591391
description subtilisin-like protease-like
nr
ID XP_006358907.1
description PREDICTED: subtilisin-like protease-like [Solanum tuberosum]
swissprot
ID Q84WS0
description Subtilisin-like protease SBT1.1 OS=Arabidopsis thaliana GN=SBTI1.1 PE=1 SV=1
trembl
ID F6HUK3
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g04820 PE=4 SV=1
Gene Ontology
ID GO:0004252
description xylem serine proteinase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001610_050 0.0 - - PREDICTED: subtilisin-like protease-like [Solanum tuberosum]
2 Hb_000702_040 0.097501864 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
3 Hb_021443_020 0.0994970106 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
4 Hb_005892_010 0.0997049247 - - PREDICTED: uncharacterized protein LOC105632168 [Jatropha curcas]
5 Hb_002639_120 0.1099689323 - - unnamed protein product [Vitis vinifera]
6 Hb_006890_050 0.1105414776 transcription factor TF Family: TCP PREDICTED: transcription factor CYCLOIDEA [Jatropha curcas]
7 Hb_001227_010 0.1169791865 transcription factor TF Family: TCP hypothetical protein POPTR_0015s03140g [Populus trichocarpa]
8 Hb_006816_540 0.1247114693 - - PREDICTED: bidirectional sugar transporter SWEET16-like [Jatropha curcas]
9 Hb_001481_110 0.1286572518 - - S-adenosylmethionine synthetase 1 family protein [Populus trichocarpa]
10 Hb_000922_290 0.1290349289 - - PREDICTED: probable boron transporter 2 [Jatropha curcas]
11 Hb_000987_080 0.1295183904 - - light-inducible protein atls1, putative [Ricinus communis]
12 Hb_007313_050 0.1297918128 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
13 Hb_005687_060 0.1314219224 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X1 [Jatropha curcas]
14 Hb_050898_010 0.1345812611 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
15 Hb_035006_010 0.1367316399 - - hypothetical protein POPTR_0017s11350g [Populus trichocarpa]
16 Hb_003939_090 0.1396573152 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
17 Hb_001059_050 0.1416781807 - - PREDICTED: putative F-box/LRR-repeat protein At3g18150 [Jatropha curcas]
18 Hb_001934_010 0.1418149294 - - o-methyltransferase, putative [Ricinus communis]
19 Hb_132517_010 0.1441016178 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like isoform X3 [Populus euphratica]
20 Hb_007885_120 0.1491406396 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_001610_050 Hb_001610_050 Hb_000702_040 Hb_000702_040 Hb_001610_050--Hb_000702_040 Hb_021443_020 Hb_021443_020 Hb_001610_050--Hb_021443_020 Hb_005892_010 Hb_005892_010 Hb_001610_050--Hb_005892_010 Hb_002639_120 Hb_002639_120 Hb_001610_050--Hb_002639_120 Hb_006890_050 Hb_006890_050 Hb_001610_050--Hb_006890_050 Hb_001227_010 Hb_001227_010 Hb_001610_050--Hb_001227_010 Hb_004586_230 Hb_004586_230 Hb_000702_040--Hb_004586_230 Hb_001587_220 Hb_001587_220 Hb_000702_040--Hb_001587_220 Hb_000702_040--Hb_002639_120 Hb_000702_040--Hb_006890_050 Hb_000702_040--Hb_005892_010 Hb_007313_050 Hb_007313_050 Hb_021443_020--Hb_007313_050 Hb_035006_010 Hb_035006_010 Hb_021443_020--Hb_035006_010 Hb_001059_050 Hb_001059_050 Hb_021443_020--Hb_001059_050 Hb_000286_210 Hb_000286_210 Hb_021443_020--Hb_000286_210 Hb_021443_020--Hb_001227_010 Hb_000922_290 Hb_000922_290 Hb_005892_010--Hb_000922_290 Hb_050898_010 Hb_050898_010 Hb_005892_010--Hb_050898_010 Hb_005892_010--Hb_001587_220 Hb_000137_030 Hb_000137_030 Hb_005892_010--Hb_000137_030 Hb_002639_120--Hb_006890_050 Hb_151616_010 Hb_151616_010 Hb_002639_120--Hb_151616_010 Hb_002025_120 Hb_002025_120 Hb_002639_120--Hb_002025_120 Hb_002639_120--Hb_001227_010 Hb_002639_120--Hb_000286_210 Hb_007885_120 Hb_007885_120 Hb_006890_050--Hb_007885_120 Hb_000840_220 Hb_000840_220 Hb_006890_050--Hb_000840_220 Hb_006816_540 Hb_006816_540 Hb_006890_050--Hb_006816_540 Hb_006890_050--Hb_001227_010 Hb_001227_010--Hb_151616_010 Hb_132517_010 Hb_132517_010 Hb_001227_010--Hb_132517_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.113097 48.7715 3.28658 51.2579 0.139533 0.833443
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0102441 0 0 9.89961 2.64512

CAGE analysis