Hb_000987_080

Information

Type -
Description -
Location Contig987: 87470-88737
Sequence    

Annotation

kegg
ID rcu:RCOM_0848460
description light-inducible protein atls1, putative
nr
ID XP_002526686.1
description light-inducible protein atls1, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SL17
description Light-inducible protein atls1, putative OS=Ricinus communis GN=RCOM_0848460 PE=4 SV=1
Gene Ontology
ID GO:0005777
description macrophage migration inhibitory factor homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000987_080 0.0 - - light-inducible protein atls1, putative [Ricinus communis]
2 Hb_000922_290 0.0808429799 - - PREDICTED: probable boron transporter 2 [Jatropha curcas]
3 Hb_000316_080 0.0962279111 - - ENTH/VHS family protein [Theobroma cacao]
4 Hb_005892_010 0.1146036867 - - PREDICTED: uncharacterized protein LOC105632168 [Jatropha curcas]
5 Hb_002241_020 0.1176893729 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
6 Hb_013691_040 0.1238920017 - - hypothetical protein B456_001G045900 [Gossypium raimondii]
7 Hb_002110_210 0.1279357659 - - purine transporter, putative [Ricinus communis]
8 Hb_001610_050 0.1295183904 - - PREDICTED: subtilisin-like protease-like [Solanum tuberosum]
9 Hb_050898_010 0.1333423896 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
10 Hb_002311_430 0.1384584753 - - hypothetical protein JCGZ_18918 [Jatropha curcas]
11 Hb_000007_210 0.1384638586 - - hypothetical protein POPTR_0010s14360g [Populus trichocarpa]
12 Hb_005147_020 0.1478063941 - - PREDICTED: uncharacterized protein LOC105629671 [Jatropha curcas]
13 Hb_000702_040 0.1502096724 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
14 Hb_009787_020 0.151969373 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]
15 Hb_001481_110 0.1544648483 - - S-adenosylmethionine synthetase 1 family protein [Populus trichocarpa]
16 Hb_006816_540 0.1594902188 - - PREDICTED: bidirectional sugar transporter SWEET16-like [Jatropha curcas]
17 Hb_002968_010 0.1604953675 - - PREDICTED: pectinesterase [Jatropha curcas]
18 Hb_000656_370 0.1642408102 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
19 Hb_000101_140 0.1644260014 - - amino acid transporter, putative [Ricinus communis]
20 Hb_000504_050 0.1647693049 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]

Gene co-expression network

sample Hb_000987_080 Hb_000987_080 Hb_000922_290 Hb_000922_290 Hb_000987_080--Hb_000922_290 Hb_000316_080 Hb_000316_080 Hb_000987_080--Hb_000316_080 Hb_005892_010 Hb_005892_010 Hb_000987_080--Hb_005892_010 Hb_002241_020 Hb_002241_020 Hb_000987_080--Hb_002241_020 Hb_013691_040 Hb_013691_040 Hb_000987_080--Hb_013691_040 Hb_002110_210 Hb_002110_210 Hb_000987_080--Hb_002110_210 Hb_000922_290--Hb_005892_010 Hb_050898_010 Hb_050898_010 Hb_000922_290--Hb_050898_010 Hb_000007_210 Hb_000007_210 Hb_000922_290--Hb_000007_210 Hb_000656_370 Hb_000656_370 Hb_000922_290--Hb_000656_370 Hb_145139_010 Hb_145139_010 Hb_000922_290--Hb_145139_010 Hb_000316_080--Hb_013691_040 Hb_000316_080--Hb_000922_290 Hb_000316_080--Hb_050898_010 Hb_001823_070 Hb_001823_070 Hb_000316_080--Hb_001823_070 Hb_000316_080--Hb_002110_210 Hb_005892_010--Hb_050898_010 Hb_001610_050 Hb_001610_050 Hb_005892_010--Hb_001610_050 Hb_001587_220 Hb_001587_220 Hb_005892_010--Hb_001587_220 Hb_000137_030 Hb_000137_030 Hb_005892_010--Hb_000137_030 Hb_000702_040 Hb_000702_040 Hb_005892_010--Hb_000702_040 Hb_002241_020--Hb_002110_210 Hb_002735_010 Hb_002735_010 Hb_002241_020--Hb_002735_010 Hb_005380_030 Hb_005380_030 Hb_002241_020--Hb_005380_030 Hb_005147_020 Hb_005147_020 Hb_002241_020--Hb_005147_020 Hb_015473_010 Hb_015473_010 Hb_002241_020--Hb_015473_010 Hb_001086_020 Hb_001086_020 Hb_013691_040--Hb_001086_020 Hb_000504_050 Hb_000504_050 Hb_013691_040--Hb_000504_050 Hb_013691_040--Hb_050898_010 Hb_013691_040--Hb_000922_290 Hb_002110_210--Hb_002735_010 Hb_004218_230 Hb_004218_230 Hb_002110_210--Hb_004218_230 Hb_002110_210--Hb_015473_010 Hb_002110_210--Hb_005147_020 Hb_000127_070 Hb_000127_070 Hb_002110_210--Hb_000127_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 13.5398 0.281232 10.9615 0.118668 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.20092 1.61352

CAGE analysis