Hb_001086_020

Information

Type -
Description -
Location Contig1086: 8334-8975
Sequence    

Annotation

kegg
ID pop:POPTR_0013s01730g
description hypothetical protein
nr
ID XP_006375746.1
description hypothetical protein POPTR_0013s01730g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FQV7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s01730g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001086_020 0.0 - - hypothetical protein POPTR_0013s01730g [Populus trichocarpa]
2 Hb_013691_040 0.1074151263 - - hypothetical protein B456_001G045900 [Gossypium raimondii]
3 Hb_000504_050 0.1531550999 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]
4 Hb_000316_080 0.1699748393 - - ENTH/VHS family protein [Theobroma cacao]
5 Hb_000987_080 0.1740339154 - - light-inducible protein atls1, putative [Ricinus communis]
6 Hb_002110_210 0.1793054703 - - purine transporter, putative [Ricinus communis]
7 Hb_001610_060 0.1805625149 - - hypothetical protein TRIUR3_12067 [Triticum urartu]
8 Hb_000036_060 0.1820172465 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
9 Hb_002241_020 0.1837852408 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
10 Hb_001976_120 0.1838687644 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
11 Hb_005892_010 0.188176191 - - PREDICTED: uncharacterized protein LOC105632168 [Jatropha curcas]
12 Hb_000203_150 0.1881783631 - - PREDICTED: uncharacterized protein LOC105116038 [Populus euphratica]
13 Hb_001013_060 0.1882819805 - - -
14 Hb_001934_010 0.1889570346 - - o-methyltransferase, putative [Ricinus communis]
15 Hb_001610_050 0.1896767926 - - PREDICTED: subtilisin-like protease-like [Solanum tuberosum]
16 Hb_000720_060 0.1898517336 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]
17 Hb_050898_010 0.1913493733 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
18 Hb_183209_020 0.1916576066 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
19 Hb_002053_090 0.192999147 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004218_230 0.1948119991 - - Peptide transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_001086_020 Hb_001086_020 Hb_013691_040 Hb_013691_040 Hb_001086_020--Hb_013691_040 Hb_000504_050 Hb_000504_050 Hb_001086_020--Hb_000504_050 Hb_000316_080 Hb_000316_080 Hb_001086_020--Hb_000316_080 Hb_000987_080 Hb_000987_080 Hb_001086_020--Hb_000987_080 Hb_002110_210 Hb_002110_210 Hb_001086_020--Hb_002110_210 Hb_001610_060 Hb_001610_060 Hb_001086_020--Hb_001610_060 Hb_013691_040--Hb_000504_050 Hb_013691_040--Hb_000316_080 Hb_013691_040--Hb_000987_080 Hb_050898_010 Hb_050898_010 Hb_013691_040--Hb_050898_010 Hb_000922_290 Hb_000922_290 Hb_013691_040--Hb_000922_290 Hb_004218_230 Hb_004218_230 Hb_000504_050--Hb_004218_230 Hb_012879_010 Hb_012879_010 Hb_000504_050--Hb_012879_010 Hb_105446_010 Hb_105446_010 Hb_000504_050--Hb_105446_010 Hb_000751_210 Hb_000751_210 Hb_000504_050--Hb_000751_210 Hb_000504_050--Hb_002110_210 Hb_000316_080--Hb_000987_080 Hb_000316_080--Hb_000922_290 Hb_000316_080--Hb_050898_010 Hb_001823_070 Hb_001823_070 Hb_000316_080--Hb_001823_070 Hb_000316_080--Hb_002110_210 Hb_000987_080--Hb_000922_290 Hb_005892_010 Hb_005892_010 Hb_000987_080--Hb_005892_010 Hb_002241_020 Hb_002241_020 Hb_000987_080--Hb_002241_020 Hb_000987_080--Hb_002110_210 Hb_002110_210--Hb_002241_020 Hb_002735_010 Hb_002735_010 Hb_002110_210--Hb_002735_010 Hb_002110_210--Hb_004218_230 Hb_015473_010 Hb_015473_010 Hb_002110_210--Hb_015473_010 Hb_005147_020 Hb_005147_020 Hb_002110_210--Hb_005147_020 Hb_000127_070 Hb_000127_070 Hb_002110_210--Hb_000127_070 Hb_000203_150 Hb_000203_150 Hb_001610_060--Hb_000203_150 Hb_001013_060 Hb_001013_060 Hb_001610_060--Hb_001013_060 Hb_000720_060 Hb_000720_060 Hb_001610_060--Hb_000720_060 Hb_016120_020 Hb_016120_020 Hb_001610_060--Hb_016120_020 Hb_000032_340 Hb_000032_340 Hb_001610_060--Hb_000032_340 Hb_000856_250 Hb_000856_250 Hb_001610_060--Hb_000856_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.66188 0 2.30937 0 0.0817869
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.864237 0.290027

CAGE analysis