Hb_000504_050

Information

Type transcription factor
Description TF Family: LOB
Location Contig504: 54513-55016
Sequence    

Annotation

kegg
ID pop:POPTR_0001s35280g
description POPTRDRAFT_641633; LOB domain protein 25
nr
ID XP_002300051.1
description LOB domain protein 25 [Populus trichocarpa]
swissprot
ID Q8L8Q3
description LOB domain-containing protein 25 OS=Arabidopsis thaliana GN=LBD25 PE=2 SV=3
trembl
ID B9GI56
description LOB domain protein 25 OS=Populus trichocarpa GN=POPTR_0001s35280g PE=4 SV=1
Gene Ontology
ID GO:0004088
description lob domain-containing protein 25

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45926: 54412-54743 , PASA_asmbl_45927: 54953-55181
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000504_050 0.0 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]
2 Hb_004218_230 0.0971425168 - - Peptide transporter, putative [Ricinus communis]
3 Hb_012879_010 0.1046675127 - - conserved hypothetical protein [Ricinus communis]
4 Hb_105446_010 0.1053981315 - - -
5 Hb_000751_210 0.1067409995 - - PREDICTED: petal death protein isoform X2 [Jatropha curcas]
6 Hb_002110_210 0.1107481375 - - purine transporter, putative [Ricinus communis]
7 Hb_013691_040 0.1107744211 - - hypothetical protein B456_001G045900 [Gossypium raimondii]
8 Hb_009252_110 0.111571093 - - hypothetical protein JCGZ_11492 [Jatropha curcas]
9 Hb_132438_010 0.1160472364 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
10 Hb_005888_040 0.1173999416 - - PREDICTED: gibberellin 20 oxidase 2 [Jatropha curcas]
11 Hb_062226_080 0.1215600375 - - -
12 Hb_009543_040 0.1217955763 - - -
13 Hb_004590_010 0.1244437783 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
14 Hb_002267_040 0.1324490101 - - -
15 Hb_002241_020 0.1337359025 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
16 Hb_017866_010 0.1341843347 - - kinase family protein [Populus trichocarpa]
17 Hb_112011_010 0.1348361146 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
18 Hb_012395_150 0.1351297487 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
19 Hb_000127_070 0.1365120216 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
20 Hb_017661_020 0.1374488981 - - hypothetical protein JCGZ_11176 [Jatropha curcas]

Gene co-expression network

sample Hb_000504_050 Hb_000504_050 Hb_004218_230 Hb_004218_230 Hb_000504_050--Hb_004218_230 Hb_012879_010 Hb_012879_010 Hb_000504_050--Hb_012879_010 Hb_105446_010 Hb_105446_010 Hb_000504_050--Hb_105446_010 Hb_000751_210 Hb_000751_210 Hb_000504_050--Hb_000751_210 Hb_002110_210 Hb_002110_210 Hb_000504_050--Hb_002110_210 Hb_013691_040 Hb_013691_040 Hb_000504_050--Hb_013691_040 Hb_000127_070 Hb_000127_070 Hb_004218_230--Hb_000127_070 Hb_004218_230--Hb_002110_210 Hb_002735_010 Hb_002735_010 Hb_004218_230--Hb_002735_010 Hb_027445_080 Hb_027445_080 Hb_004218_230--Hb_027445_080 Hb_017661_020 Hb_017661_020 Hb_004218_230--Hb_017661_020 Hb_000658_020 Hb_000658_020 Hb_012879_010--Hb_000658_020 Hb_112011_010 Hb_112011_010 Hb_012879_010--Hb_112011_010 Hb_012879_010--Hb_105446_010 Hb_004724_010 Hb_004724_010 Hb_012879_010--Hb_004724_010 Hb_179118_010 Hb_179118_010 Hb_012879_010--Hb_179118_010 Hb_017866_010 Hb_017866_010 Hb_012879_010--Hb_017866_010 Hb_105446_010--Hb_000751_210 Hb_105446_010--Hb_112011_010 Hb_105446_010--Hb_000658_020 Hb_105446_010--Hb_017866_010 Hb_132438_010 Hb_132438_010 Hb_105446_010--Hb_132438_010 Hb_105446_010--Hb_004724_010 Hb_000751_210--Hb_132438_010 Hb_009543_040 Hb_009543_040 Hb_000751_210--Hb_009543_040 Hb_000751_210--Hb_017866_010 Hb_000751_210--Hb_112011_010 Hb_001157_130 Hb_001157_130 Hb_000751_210--Hb_001157_130 Hb_002241_020 Hb_002241_020 Hb_002110_210--Hb_002241_020 Hb_002110_210--Hb_002735_010 Hb_015473_010 Hb_015473_010 Hb_002110_210--Hb_015473_010 Hb_005147_020 Hb_005147_020 Hb_002110_210--Hb_005147_020 Hb_002110_210--Hb_000127_070 Hb_001086_020 Hb_001086_020 Hb_013691_040--Hb_001086_020 Hb_000316_080 Hb_000316_080 Hb_013691_040--Hb_000316_080 Hb_000987_080 Hb_000987_080 Hb_013691_040--Hb_000987_080 Hb_050898_010 Hb_050898_010 Hb_013691_040--Hb_050898_010 Hb_000922_290 Hb_000922_290 Hb_013691_040--Hb_000922_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 12.6817 0.180047 15.3691 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 6.48496 0.389811

CAGE analysis