Hb_000316_080

Information

Type -
Description -
Location Contig316: 47164-48279
Sequence    

Annotation

kegg
ID tcc:TCM_041849
description ENTH/VHS family protein
nr
ID XP_007016428.1
description ENTH/VHS family protein [Theobroma cacao]
swissprot
ID Q99KN9
description Clathrin interactor 1 OS=Mus musculus GN=Clint1 PE=1 SV=2
trembl
ID A0A061GXX0
description ENTH/VHS family protein OS=Theobroma cacao GN=TCM_041849 PE=4 SV=1
Gene Ontology
ID GO:0006826
description enth vhs family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000316_080 0.0 - - ENTH/VHS family protein [Theobroma cacao]
2 Hb_000987_080 0.0962279111 - - light-inducible protein atls1, putative [Ricinus communis]
3 Hb_013691_040 0.1197244117 - - hypothetical protein B456_001G045900 [Gossypium raimondii]
4 Hb_000922_290 0.120740608 - - PREDICTED: probable boron transporter 2 [Jatropha curcas]
5 Hb_050898_010 0.123359438 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
6 Hb_001823_070 0.1289467432 - - PREDICTED: uncharacterized protein LOC105637371 [Jatropha curcas]
7 Hb_002110_210 0.1382193357 - - purine transporter, putative [Ricinus communis]
8 Hb_002053_090 0.1396119196 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002241_020 0.1404115226 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
10 Hb_000007_210 0.1456494026 - - hypothetical protein POPTR_0010s14360g [Populus trichocarpa]
11 Hb_005892_010 0.1457185612 - - PREDICTED: uncharacterized protein LOC105632168 [Jatropha curcas]
12 Hb_002735_010 0.1477823348 - - PREDICTED: CLAVATA3/ESR (CLE)-related protein 44 [Prunus mume]
13 Hb_000816_050 0.1569346089 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
14 Hb_015473_010 0.1577663627 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
15 Hb_002477_080 0.1610897675 - - hypothetical protein RCOM_0653450 [Ricinus communis]
16 Hb_103541_010 0.1684395961 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
17 Hb_004218_230 0.1692781308 - - Peptide transporter, putative [Ricinus communis]
18 Hb_001401_070 0.1696823187 - - glycogenin, putative [Ricinus communis]
19 Hb_001086_020 0.1699748393 - - hypothetical protein POPTR_0013s01730g [Populus trichocarpa]
20 Hb_000504_050 0.1703328925 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]

Gene co-expression network

sample Hb_000316_080 Hb_000316_080 Hb_000987_080 Hb_000987_080 Hb_000316_080--Hb_000987_080 Hb_013691_040 Hb_013691_040 Hb_000316_080--Hb_013691_040 Hb_000922_290 Hb_000922_290 Hb_000316_080--Hb_000922_290 Hb_050898_010 Hb_050898_010 Hb_000316_080--Hb_050898_010 Hb_001823_070 Hb_001823_070 Hb_000316_080--Hb_001823_070 Hb_002110_210 Hb_002110_210 Hb_000316_080--Hb_002110_210 Hb_000987_080--Hb_000922_290 Hb_005892_010 Hb_005892_010 Hb_000987_080--Hb_005892_010 Hb_002241_020 Hb_002241_020 Hb_000987_080--Hb_002241_020 Hb_000987_080--Hb_013691_040 Hb_000987_080--Hb_002110_210 Hb_001086_020 Hb_001086_020 Hb_013691_040--Hb_001086_020 Hb_000504_050 Hb_000504_050 Hb_013691_040--Hb_000504_050 Hb_013691_040--Hb_050898_010 Hb_013691_040--Hb_000922_290 Hb_000922_290--Hb_005892_010 Hb_000922_290--Hb_050898_010 Hb_000007_210 Hb_000007_210 Hb_000922_290--Hb_000007_210 Hb_000656_370 Hb_000656_370 Hb_000922_290--Hb_000656_370 Hb_145139_010 Hb_145139_010 Hb_000922_290--Hb_145139_010 Hb_050898_010--Hb_005892_010 Hb_183209_020 Hb_183209_020 Hb_050898_010--Hb_183209_020 Hb_000137_030 Hb_000137_030 Hb_050898_010--Hb_000137_030 Hb_103541_010 Hb_103541_010 Hb_050898_010--Hb_103541_010 Hb_000816_050 Hb_000816_050 Hb_050898_010--Hb_000816_050 Hb_006364_020 Hb_006364_020 Hb_001823_070--Hb_006364_020 Hb_126466_010 Hb_126466_010 Hb_001823_070--Hb_126466_010 Hb_000111_190 Hb_000111_190 Hb_001823_070--Hb_000111_190 Hb_002477_080 Hb_002477_080 Hb_001823_070--Hb_002477_080 Hb_000152_250 Hb_000152_250 Hb_001823_070--Hb_000152_250 Hb_130967_010 Hb_130967_010 Hb_001823_070--Hb_130967_010 Hb_002110_210--Hb_002241_020 Hb_002735_010 Hb_002735_010 Hb_002110_210--Hb_002735_010 Hb_004218_230 Hb_004218_230 Hb_002110_210--Hb_004218_230 Hb_015473_010 Hb_015473_010 Hb_002110_210--Hb_015473_010 Hb_005147_020 Hb_005147_020 Hb_002110_210--Hb_005147_020 Hb_000127_070 Hb_000127_070 Hb_002110_210--Hb_000127_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.584586 0.0216579 0.550713 0.0255123 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.238294 0.0992235

CAGE analysis