Hb_000732_240

Information

Type -
Description -
Location Contig732: 239071-239491
Sequence    

Annotation

kegg
ID tcc:TCM_029997
description Dynein light chain type 1 family protein isoform 1
nr
ID XP_012091487.1
description PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
swissprot
ID O02414
description Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina PE=3 SV=1
trembl
ID A0A067JLJ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21351 PE=4 SV=1
Gene Ontology
ID GO:0043226
description dynein light chain cytoplasmic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000732_240 0.0 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
2 Hb_000099_190 0.1120752763 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
3 Hb_101370_010 0.1503990986 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
4 Hb_035761_010 0.1566272923 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
5 Hb_049915_010 0.1622303976 - - PREDICTED: uncharacterized serine-rich protein C215.13 [Jatropha curcas]
6 Hb_017159_010 0.1678393233 - - -
7 Hb_001357_280 0.1683535814 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
8 Hb_000914_050 0.1747169789 - - PREDICTED: serine/threonine-protein kinase UCNL [Jatropha curcas]
9 Hb_000172_230 0.1752768215 - - myo-inositol-1 phosphate synthase [Hevea brasiliensis]
10 Hb_001103_070 0.175660222 - - Patellin-3, putative [Ricinus communis]
11 Hb_000532_150 0.1782374274 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
12 Hb_000094_190 0.1785605988 - - PREDICTED: glucan endo-1,3-beta-glucosidase 7-like [Jatropha curcas]
13 Hb_005656_160 0.1840142518 - - PREDICTED: uncharacterized protein LOC105637448 [Jatropha curcas]
14 Hb_000594_110 0.1854766441 transcription factor TF Family: RAV DNA-binding protein RAV1, putative [Ricinus communis]
15 Hb_008643_020 0.1860814999 - - Cf-4/9 disease resistance-like family protein [Populus trichocarpa]
16 Hb_154538_010 0.1867683046 - - -
17 Hb_160405_010 0.187254844 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
18 Hb_002675_090 0.1887903954 - - conserved hypothetical protein [Ricinus communis]
19 Hb_145317_010 0.1894638732 - - PREDICTED: transmembrane 9 superfamily member 11 [Jatropha curcas]
20 Hb_001518_060 0.1915619028 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 9 [Jatropha curcas]

Gene co-expression network

sample Hb_000732_240 Hb_000732_240 Hb_000099_190 Hb_000099_190 Hb_000732_240--Hb_000099_190 Hb_101370_010 Hb_101370_010 Hb_000732_240--Hb_101370_010 Hb_035761_010 Hb_035761_010 Hb_000732_240--Hb_035761_010 Hb_049915_010 Hb_049915_010 Hb_000732_240--Hb_049915_010 Hb_017159_010 Hb_017159_010 Hb_000732_240--Hb_017159_010 Hb_001357_280 Hb_001357_280 Hb_000732_240--Hb_001357_280 Hb_000099_190--Hb_035761_010 Hb_000099_190--Hb_049915_010 Hb_000438_150 Hb_000438_150 Hb_000099_190--Hb_000438_150 Hb_000914_050 Hb_000914_050 Hb_000099_190--Hb_000914_050 Hb_001103_070 Hb_001103_070 Hb_000099_190--Hb_001103_070 Hb_005056_100 Hb_005056_100 Hb_101370_010--Hb_005056_100 Hb_007951_090 Hb_007951_090 Hb_101370_010--Hb_007951_090 Hb_000172_230 Hb_000172_230 Hb_101370_010--Hb_000172_230 Hb_048944_020 Hb_048944_020 Hb_101370_010--Hb_048944_020 Hb_158349_010 Hb_158349_010 Hb_101370_010--Hb_158349_010 Hb_187021_010 Hb_187021_010 Hb_035761_010--Hb_187021_010 Hb_035761_010--Hb_101370_010 Hb_154538_010 Hb_154538_010 Hb_035761_010--Hb_154538_010 Hb_035761_010--Hb_048944_020 Hb_000733_090 Hb_000733_090 Hb_049915_010--Hb_000733_090 Hb_008406_030 Hb_008406_030 Hb_049915_010--Hb_008406_030 Hb_004297_080 Hb_004297_080 Hb_049915_010--Hb_004297_080 Hb_008643_020 Hb_008643_020 Hb_049915_010--Hb_008643_020 Hb_049915_010--Hb_000172_230 Hb_002783_210 Hb_002783_210 Hb_049915_010--Hb_002783_210 Hb_002250_050 Hb_002250_050 Hb_017159_010--Hb_002250_050 Hb_001754_060 Hb_001754_060 Hb_017159_010--Hb_001754_060 Hb_000200_170 Hb_000200_170 Hb_017159_010--Hb_000200_170 Hb_001255_010 Hb_001255_010 Hb_017159_010--Hb_001255_010 Hb_002849_070 Hb_002849_070 Hb_017159_010--Hb_002849_070 Hb_001178_080 Hb_001178_080 Hb_017159_010--Hb_001178_080 Hb_000532_150 Hb_000532_150 Hb_001357_280--Hb_000532_150 Hb_001357_280--Hb_017159_010 Hb_000594_110 Hb_000594_110 Hb_001357_280--Hb_000594_110 Hb_000284_170 Hb_000284_170 Hb_001357_280--Hb_000284_170 Hb_001357_280--Hb_002250_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.4656 81.6803 48.0541 140.041 16.4999 20.2948
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.73922 2.15602 0.390337 10.8116 8.49298

CAGE analysis