Hb_101370_010

Information

Type -
Description -
Location Contig101370: 44-1120
Sequence    

Annotation

kegg
ID cit:102623211
description putative disease resistance protein RGA1-like
nr
ID KDP43125.1
description hypothetical protein JCGZ_26658 [Jatropha curcas]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID A0A067LF36
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26658 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00679: 584-1038
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_101370_010 0.0 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
2 Hb_005056_100 0.1369254838 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
3 Hb_000732_240 0.1503990986 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
4 Hb_007951_090 0.1573314586 - - hypothetical protein POPTR_0003s06080g [Populus trichocarpa]
5 Hb_000172_230 0.1587685286 - - myo-inositol-1 phosphate synthase [Hevea brasiliensis]
6 Hb_048944_020 0.160199635 - - hypothetical protein POPTR_0014s002002g, partial [Populus trichocarpa]
7 Hb_158349_010 0.1646946498 - - plastid CUL1 [Hevea brasiliensis]
8 Hb_002783_210 0.1747679821 - - PREDICTED: uncharacterized protein LOC105635341 [Jatropha curcas]
9 Hb_076771_010 0.1773161694 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
10 Hb_002233_080 0.1814491556 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
11 Hb_008643_020 0.1819453487 - - Cf-4/9 disease resistance-like family protein [Populus trichocarpa]
12 Hb_113676_010 0.1831397468 - - PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
13 Hb_049915_010 0.1837073888 - - PREDICTED: uncharacterized serine-rich protein C215.13 [Jatropha curcas]
14 Hb_035761_010 0.1850998342 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
15 Hb_000532_150 0.1855193282 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
16 Hb_091336_010 0.1861187727 - - -
17 Hb_002035_020 0.1882850657 transcription factor TF Family: TRAF hypothetical protein B456_011G050200 [Gossypium raimondii]
18 Hb_004297_080 0.1918829186 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
19 Hb_017549_010 0.1965751525 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00222 [Jatropha curcas]
20 Hb_036029_020 0.1976223933 - - PREDICTED: patellin-3-like [Jatropha curcas]

Gene co-expression network

sample Hb_101370_010 Hb_101370_010 Hb_005056_100 Hb_005056_100 Hb_101370_010--Hb_005056_100 Hb_000732_240 Hb_000732_240 Hb_101370_010--Hb_000732_240 Hb_007951_090 Hb_007951_090 Hb_101370_010--Hb_007951_090 Hb_000172_230 Hb_000172_230 Hb_101370_010--Hb_000172_230 Hb_048944_020 Hb_048944_020 Hb_101370_010--Hb_048944_020 Hb_158349_010 Hb_158349_010 Hb_101370_010--Hb_158349_010 Hb_001405_060 Hb_001405_060 Hb_005056_100--Hb_001405_060 Hb_002233_080 Hb_002233_080 Hb_005056_100--Hb_002233_080 Hb_000567_220 Hb_000567_220 Hb_005056_100--Hb_000567_220 Hb_012395_260 Hb_012395_260 Hb_005056_100--Hb_012395_260 Hb_004297_080 Hb_004297_080 Hb_005056_100--Hb_004297_080 Hb_000099_190 Hb_000099_190 Hb_000732_240--Hb_000099_190 Hb_035761_010 Hb_035761_010 Hb_000732_240--Hb_035761_010 Hb_049915_010 Hb_049915_010 Hb_000732_240--Hb_049915_010 Hb_017159_010 Hb_017159_010 Hb_000732_240--Hb_017159_010 Hb_001357_280 Hb_001357_280 Hb_000732_240--Hb_001357_280 Hb_000321_010 Hb_000321_010 Hb_007951_090--Hb_000321_010 Hb_002783_210 Hb_002783_210 Hb_007951_090--Hb_002783_210 Hb_010810_040 Hb_010810_040 Hb_007951_090--Hb_010810_040 Hb_003529_010 Hb_003529_010 Hb_007951_090--Hb_003529_010 Hb_001489_040 Hb_001489_040 Hb_007951_090--Hb_001489_040 Hb_036029_020 Hb_036029_020 Hb_000172_230--Hb_036029_020 Hb_001675_290 Hb_001675_290 Hb_000172_230--Hb_001675_290 Hb_008643_020 Hb_008643_020 Hb_000172_230--Hb_008643_020 Hb_007749_020 Hb_007749_020 Hb_000172_230--Hb_007749_020 Hb_076771_010 Hb_076771_010 Hb_000172_230--Hb_076771_010 Hb_001675_310 Hb_001675_310 Hb_000172_230--Hb_001675_310 Hb_048944_020--Hb_035761_010 Hb_000438_150 Hb_000438_150 Hb_048944_020--Hb_000438_150 Hb_048944_020--Hb_005056_100 Hb_048944_020--Hb_000099_190 Hb_000189_070 Hb_000189_070 Hb_048944_020--Hb_000189_070 Hb_143933_010 Hb_143933_010 Hb_158349_010--Hb_143933_010 Hb_002965_180 Hb_002965_180 Hb_158349_010--Hb_002965_180 Hb_113676_010 Hb_113676_010 Hb_158349_010--Hb_113676_010 Hb_091336_010 Hb_091336_010 Hb_158349_010--Hb_091336_010 Hb_130739_010 Hb_130739_010 Hb_158349_010--Hb_130739_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.742508 5.00832 2.78129 7.36918 0.413774 0.373547
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.481855 0.149568

CAGE analysis