Hb_113676_010

Information

Type -
Description -
Location Contig113676: 1153-2757
Sequence    

Annotation

kegg
ID rcu:RCOM_0024480
description Disease resistance protein RPM1, putative
nr
ID XP_011034099.1
description PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
swissprot
ID Q39214
description Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1
trembl
ID B9SPJ1
description Disease resistance protein RPM1, putative OS=Ricinus communis GN=RCOM_0024480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04108: 870-2857
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_113676_010 0.0 - - PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
2 Hb_001459_040 0.1425324652 - - Ankyrin repeat-containing protein [Medicago truncatula]
3 Hb_158349_010 0.1504304296 - - plastid CUL1 [Hevea brasiliensis]
4 Hb_000532_150 0.1531125743 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
5 Hb_033327_010 0.1631581691 - - SYM8 [Pisum sativum]
6 Hb_173271_010 0.1639471574 - - Disease resistance protein RPP13, putative [Ricinus communis]
7 Hb_108670_010 0.1765959386 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
8 Hb_137349_010 0.1815361523 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
9 Hb_001054_110 0.1823882549 - - PREDICTED: U-box domain-containing protein 21-like [Jatropha curcas]
10 Hb_091336_010 0.1827328879 - - -
11 Hb_101370_010 0.1831397468 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
12 Hb_008963_010 0.1854373243 desease resistance Gene Name: LRR_4 PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
13 Hb_000284_170 0.1855437652 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
14 Hb_000926_110 0.1925227989 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
15 Hb_000594_110 0.1932236084 transcription factor TF Family: RAV DNA-binding protein RAV1, putative [Ricinus communis]
16 Hb_005048_120 0.1948010548 - - -
17 Hb_000925_020 0.1979579255 - - PREDICTED: protein YLS9 [Jatropha curcas]
18 Hb_004924_020 0.1981995731 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_010142_040 0.1985516236 - - PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
20 Hb_003209_120 0.2006477337 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]

Gene co-expression network

sample Hb_113676_010 Hb_113676_010 Hb_001459_040 Hb_001459_040 Hb_113676_010--Hb_001459_040 Hb_158349_010 Hb_158349_010 Hb_113676_010--Hb_158349_010 Hb_000532_150 Hb_000532_150 Hb_113676_010--Hb_000532_150 Hb_033327_010 Hb_033327_010 Hb_113676_010--Hb_033327_010 Hb_173271_010 Hb_173271_010 Hb_113676_010--Hb_173271_010 Hb_108670_010 Hb_108670_010 Hb_113676_010--Hb_108670_010 Hb_001459_040--Hb_173271_010 Hb_137349_010 Hb_137349_010 Hb_001459_040--Hb_137349_010 Hb_055277_010 Hb_055277_010 Hb_001459_040--Hb_055277_010 Hb_001459_040--Hb_108670_010 Hb_004112_060 Hb_004112_060 Hb_001459_040--Hb_004112_060 Hb_143933_010 Hb_143933_010 Hb_158349_010--Hb_143933_010 Hb_002965_180 Hb_002965_180 Hb_158349_010--Hb_002965_180 Hb_091336_010 Hb_091336_010 Hb_158349_010--Hb_091336_010 Hb_130739_010 Hb_130739_010 Hb_158349_010--Hb_130739_010 Hb_101370_010 Hb_101370_010 Hb_158349_010--Hb_101370_010 Hb_001514_250 Hb_001514_250 Hb_000532_150--Hb_001514_250 Hb_001269_090 Hb_001269_090 Hb_000532_150--Hb_001269_090 Hb_012743_010 Hb_012743_010 Hb_000532_150--Hb_012743_010 Hb_000284_170 Hb_000284_170 Hb_000532_150--Hb_000284_170 Hb_000172_230 Hb_000172_230 Hb_000532_150--Hb_000172_230 Hb_033327_010--Hb_000284_170 Hb_007120_010 Hb_007120_010 Hb_033327_010--Hb_007120_010 Hb_000594_110 Hb_000594_110 Hb_033327_010--Hb_000594_110 Hb_005048_120 Hb_005048_120 Hb_033327_010--Hb_005048_120 Hb_000284_180 Hb_000284_180 Hb_033327_010--Hb_000284_180 Hb_010142_040 Hb_010142_040 Hb_033327_010--Hb_010142_040 Hb_001775_090 Hb_001775_090 Hb_173271_010--Hb_001775_090 Hb_000162_130 Hb_000162_130 Hb_173271_010--Hb_000162_130 Hb_173271_010--Hb_005048_120 Hb_002133_010 Hb_002133_010 Hb_173271_010--Hb_002133_010 Hb_064885_010 Hb_064885_010 Hb_173271_010--Hb_064885_010 Hb_005773_010 Hb_005773_010 Hb_108670_010--Hb_005773_010 Hb_000072_010 Hb_000072_010 Hb_108670_010--Hb_000072_010 Hb_104855_010 Hb_104855_010 Hb_108670_010--Hb_104855_010 Hb_108670_010--Hb_055277_010 Hb_000628_050 Hb_000628_050 Hb_108670_010--Hb_000628_050 Hb_005170_020 Hb_005170_020 Hb_108670_010--Hb_005170_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.34519 12.9226 9.62419 14.7203 0.150114 0.917168
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.4913 0.272847 0 0.108813 0.0953936

CAGE analysis