Hb_137349_010

Information

Type -
Description -
Location Contig137349: 3-513
Sequence    

Annotation

kegg
ID pop:POPTR_0009s13290g
description POPTRDRAFT_557117; hypothetical protein
nr
ID XP_012084369.1
description PREDICTED: putative amidase C869.01 [Jatropha curcas]
swissprot
ID Q8Y3C3
description Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Ralstonia solanacearum (strain GMI1000) GN=gatA PE=3 SV=1
trembl
ID A0A067K5P0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19580 PE=4 SV=1
Gene Ontology
ID GO:0016884
description amidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_137349_010 0.0 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
2 Hb_000628_050 0.1017856384 - - nucleic acid binding protein, putative [Ricinus communis]
3 Hb_004241_190 0.1158818313 - - -
4 Hb_005773_010 0.1172445886 - - -
5 Hb_173029_010 0.1185114978 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_000061_060 0.1265169003 transcription factor TF Family: MYB-related transcription factor MYB28 [Arabidopsis thaliana]
7 Hb_000668_220 0.1350545511 - - PREDICTED: uncharacterized protein LOC105119281 [Populus euphratica]
8 Hb_000072_010 0.1353631965 - - hypothetical protein B456_006G246700 [Gossypium raimondii]
9 Hb_064885_010 0.1362826234 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
10 Hb_000925_020 0.136793784 - - PREDICTED: protein YLS9 [Jatropha curcas]
11 Hb_160950_010 0.137494902 - - PREDICTED: uncharacterized protein LOC105761043 [Gossypium raimondii]
12 Hb_104855_010 0.1380008816 - - -
13 Hb_053935_010 0.138245032 - - hypothetical protein EUGRSUZ_G02294 [Eucalyptus grandis]
14 Hb_136973_020 0.1407184447 - - -
15 Hb_005928_010 0.1422261221 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]
16 Hb_002849_010 0.1438022505 - - PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]
17 Hb_009083_020 0.1438240241 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
18 Hb_128460_020 0.144343009 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]
19 Hb_001054_110 0.1452997445 - - PREDICTED: U-box domain-containing protein 21-like [Jatropha curcas]
20 Hb_014361_140 0.1457096121 - - PREDICTED: peroxidase 51 [Jatropha curcas]

Gene co-expression network

sample Hb_137349_010 Hb_137349_010 Hb_000628_050 Hb_000628_050 Hb_137349_010--Hb_000628_050 Hb_004241_190 Hb_004241_190 Hb_137349_010--Hb_004241_190 Hb_005773_010 Hb_005773_010 Hb_137349_010--Hb_005773_010 Hb_173029_010 Hb_173029_010 Hb_137349_010--Hb_173029_010 Hb_000061_060 Hb_000061_060 Hb_137349_010--Hb_000061_060 Hb_000668_220 Hb_000668_220 Hb_137349_010--Hb_000668_220 Hb_000628_050--Hb_004241_190 Hb_000628_050--Hb_173029_010 Hb_000628_050--Hb_005773_010 Hb_000628_050--Hb_000061_060 Hb_000628_050--Hb_000668_220 Hb_053935_010 Hb_053935_010 Hb_000628_050--Hb_053935_010 Hb_004241_190--Hb_053935_010 Hb_004241_190--Hb_000061_060 Hb_000373_220 Hb_000373_220 Hb_004241_190--Hb_000373_220 Hb_004241_190--Hb_173029_010 Hb_128460_020 Hb_128460_020 Hb_004241_190--Hb_128460_020 Hb_000072_010 Hb_000072_010 Hb_005773_010--Hb_000072_010 Hb_104855_010 Hb_104855_010 Hb_005773_010--Hb_104855_010 Hb_160950_010 Hb_160950_010 Hb_005773_010--Hb_160950_010 Hb_039440_010 Hb_039440_010 Hb_005773_010--Hb_039440_010 Hb_005773_010--Hb_000061_060 Hb_173029_010--Hb_000668_220 Hb_173029_010--Hb_000373_220 Hb_173029_010--Hb_053935_010 Hb_000904_110 Hb_000904_110 Hb_173029_010--Hb_000904_110 Hb_014361_140 Hb_014361_140 Hb_000061_060--Hb_014361_140 Hb_000061_060--Hb_128460_020 Hb_000061_060--Hb_053935_010 Hb_000061_060--Hb_104855_010 Hb_158110_010 Hb_158110_010 Hb_000061_060--Hb_158110_010 Hb_000668_220--Hb_004241_190 Hb_000668_220--Hb_000373_220 Hb_000668_220--Hb_053935_010 Hb_001511_200 Hb_001511_200 Hb_000668_220--Hb_001511_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.936441 0.913229 1.23142 0 0.0646105
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis