Hb_005170_020

Information

Type -
Description -
Location Contig5170: 7696-10930
Sequence    

Annotation

kegg
ID rcu:RCOM_1446790
description receptor serine-threonine protein kinase, putative (EC:2.7.11.25)
nr
ID XP_002512892.1
description receptor serine-threonine protein kinase, putative [Ricinus communis]
swissprot
ID Q9FE20
description Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1
trembl
ID B9RH33
description Receptor serine-threonine protein kinase, putative OS=Ricinus communis GN=RCOM_1446790 PE=3 SV=1
Gene Ontology
ID GO:0005622
description serine threonine-protein kinase cdl1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46543: 9971-10379
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005170_020 0.0 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
2 Hb_108670_010 0.1404774134 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
3 Hb_055277_010 0.1554861305 - - PREDICTED: coenzyme Q-binding protein COQ10 homolog, mitochondrial [Jatropha curcas]
4 Hb_001404_030 0.1717324127 - - DWNN domain isoform 3 [Theobroma cacao]
5 Hb_001115_100 0.1801721264 - - PREDICTED: uncharacterized protein LOC103714121 [Phoenix dactylifera]
6 Hb_104855_010 0.1842407595 - - -
7 Hb_010369_010 0.1875738774 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000061_060 0.187914738 transcription factor TF Family: MYB-related transcription factor MYB28 [Arabidopsis thaliana]
9 Hb_014361_140 0.1896905337 - - PREDICTED: peroxidase 51 [Jatropha curcas]
10 Hb_011671_360 0.1922219155 - - Hyoscyamine 6-dioxygenase, putative [Ricinus communis]
11 Hb_005773_010 0.1925937168 - - -
12 Hb_000072_010 0.1932499753 - - hypothetical protein B456_006G246700 [Gossypium raimondii]
13 Hb_003209_120 0.1946108091 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
14 Hb_000111_200 0.1946173489 - - PREDICTED: CYSTM1 family protein A-like [Cucumis melo]
15 Hb_128460_020 0.1950451342 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]
16 Hb_182625_010 0.1971564221 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
17 Hb_004241_190 0.1985335402 - - -
18 Hb_053935_010 0.2003448015 - - hypothetical protein EUGRSUZ_G02294 [Eucalyptus grandis]
19 Hb_000628_050 0.2013438577 - - nucleic acid binding protein, putative [Ricinus communis]
20 Hb_158110_010 0.2023464817 - - hypothetical protein CICLE_v10012017mg [Citrus clementina]

Gene co-expression network

sample Hb_005170_020 Hb_005170_020 Hb_108670_010 Hb_108670_010 Hb_005170_020--Hb_108670_010 Hb_055277_010 Hb_055277_010 Hb_005170_020--Hb_055277_010 Hb_001404_030 Hb_001404_030 Hb_005170_020--Hb_001404_030 Hb_001115_100 Hb_001115_100 Hb_005170_020--Hb_001115_100 Hb_104855_010 Hb_104855_010 Hb_005170_020--Hb_104855_010 Hb_010369_010 Hb_010369_010 Hb_005170_020--Hb_010369_010 Hb_005773_010 Hb_005773_010 Hb_108670_010--Hb_005773_010 Hb_000072_010 Hb_000072_010 Hb_108670_010--Hb_000072_010 Hb_108670_010--Hb_104855_010 Hb_108670_010--Hb_055277_010 Hb_000628_050 Hb_000628_050 Hb_108670_010--Hb_000628_050 Hb_002849_010 Hb_002849_010 Hb_055277_010--Hb_002849_010 Hb_136973_020 Hb_136973_020 Hb_055277_010--Hb_136973_020 Hb_005928_010 Hb_005928_010 Hb_055277_010--Hb_005928_010 Hb_064885_010 Hb_064885_010 Hb_055277_010--Hb_064885_010 Hb_055277_010--Hb_000628_050 Hb_023768_020 Hb_023768_020 Hb_001404_030--Hb_023768_020 Hb_000111_200 Hb_000111_200 Hb_001404_030--Hb_000111_200 Hb_003209_120 Hb_003209_120 Hb_001404_030--Hb_003209_120 Hb_001404_030--Hb_001115_100 Hb_027905_010 Hb_027905_010 Hb_001404_030--Hb_027905_010 Hb_017549_010 Hb_017549_010 Hb_001115_100--Hb_017549_010 Hb_002186_030 Hb_002186_030 Hb_001115_100--Hb_002186_030 Hb_001115_100--Hb_003209_120 Hb_004374_170 Hb_004374_170 Hb_001115_100--Hb_004374_170 Hb_001221_050 Hb_001221_050 Hb_001115_100--Hb_001221_050 Hb_001675_350 Hb_001675_350 Hb_001115_100--Hb_001675_350 Hb_011671_360 Hb_011671_360 Hb_104855_010--Hb_011671_360 Hb_104855_010--Hb_000072_010 Hb_104855_010--Hb_005773_010 Hb_000061_060 Hb_000061_060 Hb_104855_010--Hb_000061_060 Hb_182625_010 Hb_182625_010 Hb_104855_010--Hb_182625_010 Hb_014361_140 Hb_014361_140 Hb_104855_010--Hb_014361_140 Hb_000769_030 Hb_000769_030 Hb_010369_010--Hb_000769_030 Hb_128460_020 Hb_128460_020 Hb_010369_010--Hb_128460_020 Hb_010369_010--Hb_014361_140 Hb_053935_010 Hb_053935_010 Hb_010369_010--Hb_053935_010 Hb_011429_010 Hb_011429_010 Hb_010369_010--Hb_011429_010 Hb_158110_010 Hb_158110_010 Hb_010369_010--Hb_158110_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.180163 0.117482 0.257112 0.0139586 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.024971 0 0 0

CAGE analysis