Hb_023768_020

Information

Type -
Description -
Location Contig23768: 21059-21625
Sequence    

Annotation

kegg
ID rcu:RCOM_1037480
description hypothetical protein
nr
ID XP_002513975.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RJQ6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1037480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023768_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001404_030 0.1276090498 - - DWNN domain isoform 3 [Theobroma cacao]
3 Hb_000111_200 0.1309773312 - - PREDICTED: CYSTM1 family protein A-like [Cucumis melo]
4 Hb_008406_030 0.1679839833 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
5 Hb_003209_120 0.1687730374 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
6 Hb_001787_070 0.1802181602 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Camelina sativa]
7 Hb_004241_200 0.1808780547 - - hypothetical protein JCGZ_00744 [Jatropha curcas]
8 Hb_003209_040 0.1906223782 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 22-like [Gossypium raimondii]
9 Hb_000003_760 0.1957490456 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA26-like [Jatropha curcas]
10 Hb_001195_650 0.1972620216 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
11 Hb_027905_010 0.2000963198 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
12 Hb_000284_170 0.2027774006 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
13 Hb_009557_050 0.2089624351 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
14 Hb_000661_010 0.2176852646 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
15 Hb_000021_010 0.2193650442 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001016_020 0.2201400312 - - conserved hypothetical protein [Ricinus communis]
17 Hb_019026_030 0.2208222505 - - hypothetical protein JCGZ_00744 [Jatropha curcas]
18 Hb_000983_110 0.223440513 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
19 Hb_108670_010 0.2241921935 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
20 Hb_002026_050 0.2258697844 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]

Gene co-expression network

sample Hb_023768_020 Hb_023768_020 Hb_001404_030 Hb_001404_030 Hb_023768_020--Hb_001404_030 Hb_000111_200 Hb_000111_200 Hb_023768_020--Hb_000111_200 Hb_008406_030 Hb_008406_030 Hb_023768_020--Hb_008406_030 Hb_003209_120 Hb_003209_120 Hb_023768_020--Hb_003209_120 Hb_001787_070 Hb_001787_070 Hb_023768_020--Hb_001787_070 Hb_004241_200 Hb_004241_200 Hb_023768_020--Hb_004241_200 Hb_001404_030--Hb_000111_200 Hb_001404_030--Hb_003209_120 Hb_001115_100 Hb_001115_100 Hb_001404_030--Hb_001115_100 Hb_005170_020 Hb_005170_020 Hb_001404_030--Hb_005170_020 Hb_027905_010 Hb_027905_010 Hb_001404_030--Hb_027905_010 Hb_000111_200--Hb_003209_120 Hb_000661_010 Hb_000661_010 Hb_000111_200--Hb_000661_010 Hb_001195_650 Hb_001195_650 Hb_000111_200--Hb_001195_650 Hb_000111_200--Hb_008406_030 Hb_008406_030--Hb_004241_200 Hb_009557_050 Hb_009557_050 Hb_008406_030--Hb_009557_050 Hb_001472_140 Hb_001472_140 Hb_008406_030--Hb_001472_140 Hb_008406_030--Hb_001195_650 Hb_004297_080 Hb_004297_080 Hb_008406_030--Hb_004297_080 Hb_008406_030--Hb_027905_010 Hb_000358_170 Hb_000358_170 Hb_003209_120--Hb_000358_170 Hb_003209_040 Hb_003209_040 Hb_003209_120--Hb_003209_040 Hb_003209_120--Hb_001115_100 Hb_003209_120--Hb_027905_010 Hb_000777_020 Hb_000777_020 Hb_003209_120--Hb_000777_020 Hb_001257_120 Hb_001257_120 Hb_003209_120--Hb_001257_120 Hb_032920_040 Hb_032920_040 Hb_001787_070--Hb_032920_040 Hb_000003_760 Hb_000003_760 Hb_001787_070--Hb_000003_760 Hb_010142_040 Hb_010142_040 Hb_001787_070--Hb_010142_040 Hb_082225_010 Hb_082225_010 Hb_001787_070--Hb_082225_010 Hb_031530_010 Hb_031530_010 Hb_001787_070--Hb_031530_010 Hb_000836_160 Hb_000836_160 Hb_001787_070--Hb_000836_160 Hb_004241_200--Hb_003209_040 Hb_004241_200--Hb_001195_650 Hb_000638_180 Hb_000638_180 Hb_004241_200--Hb_000638_180 Hb_003209_090 Hb_003209_090 Hb_004241_200--Hb_003209_090 Hb_000983_110 Hb_000983_110 Hb_004241_200--Hb_000983_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.330781 7.08982 2.7729 9.8413 0.047582 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.549859 1.81478 0 0.248973 0.496953

CAGE analysis