Hb_001404_030

Information

Type -
Description -
Location Contig1404: 27459-27842
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_007039789.1
description DWNN domain isoform 3 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061G371
description DWNN domain isoform 3 OS=Theobroma cacao GN=TCM_015936 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001404_030 0.0 - - DWNN domain isoform 3 [Theobroma cacao]
2 Hb_023768_020 0.1276090498 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000111_200 0.1329181583 - - PREDICTED: CYSTM1 family protein A-like [Cucumis melo]
4 Hb_003209_120 0.1441436702 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
5 Hb_001115_100 0.1692822929 - - PREDICTED: uncharacterized protein LOC103714121 [Phoenix dactylifera]
6 Hb_005170_020 0.1717324127 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
7 Hb_027905_010 0.1739282162 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
8 Hb_108670_010 0.1769996488 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
9 Hb_000661_010 0.1793373252 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
10 Hb_000021_010 0.1809845118 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003209_040 0.1833235214 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 22-like [Gossypium raimondii]
12 Hb_008406_030 0.1853133922 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
13 Hb_000284_170 0.1857281517 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
14 Hb_001195_650 0.1864647345 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
15 Hb_017549_010 0.189424612 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00222 [Jatropha curcas]
16 Hb_001787_070 0.1911563163 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Camelina sativa]
17 Hb_000532_150 0.1962737627 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
18 Hb_004241_200 0.1978742647 - - hypothetical protein JCGZ_00744 [Jatropha curcas]
19 Hb_000777_020 0.1983242009 - - PREDICTED: 3-ketoacyl-CoA synthase 11 [Jatropha curcas]
20 Hb_049915_010 0.1988983346 - - PREDICTED: uncharacterized serine-rich protein C215.13 [Jatropha curcas]

Gene co-expression network

sample Hb_001404_030 Hb_001404_030 Hb_023768_020 Hb_023768_020 Hb_001404_030--Hb_023768_020 Hb_000111_200 Hb_000111_200 Hb_001404_030--Hb_000111_200 Hb_003209_120 Hb_003209_120 Hb_001404_030--Hb_003209_120 Hb_001115_100 Hb_001115_100 Hb_001404_030--Hb_001115_100 Hb_005170_020 Hb_005170_020 Hb_001404_030--Hb_005170_020 Hb_027905_010 Hb_027905_010 Hb_001404_030--Hb_027905_010 Hb_023768_020--Hb_000111_200 Hb_008406_030 Hb_008406_030 Hb_023768_020--Hb_008406_030 Hb_023768_020--Hb_003209_120 Hb_001787_070 Hb_001787_070 Hb_023768_020--Hb_001787_070 Hb_004241_200 Hb_004241_200 Hb_023768_020--Hb_004241_200 Hb_000111_200--Hb_003209_120 Hb_000661_010 Hb_000661_010 Hb_000111_200--Hb_000661_010 Hb_001195_650 Hb_001195_650 Hb_000111_200--Hb_001195_650 Hb_000111_200--Hb_008406_030 Hb_000358_170 Hb_000358_170 Hb_003209_120--Hb_000358_170 Hb_003209_040 Hb_003209_040 Hb_003209_120--Hb_003209_040 Hb_003209_120--Hb_001115_100 Hb_003209_120--Hb_027905_010 Hb_000777_020 Hb_000777_020 Hb_003209_120--Hb_000777_020 Hb_001257_120 Hb_001257_120 Hb_003209_120--Hb_001257_120 Hb_017549_010 Hb_017549_010 Hb_001115_100--Hb_017549_010 Hb_002186_030 Hb_002186_030 Hb_001115_100--Hb_002186_030 Hb_004374_170 Hb_004374_170 Hb_001115_100--Hb_004374_170 Hb_001221_050 Hb_001221_050 Hb_001115_100--Hb_001221_050 Hb_001675_350 Hb_001675_350 Hb_001115_100--Hb_001675_350 Hb_108670_010 Hb_108670_010 Hb_005170_020--Hb_108670_010 Hb_055277_010 Hb_055277_010 Hb_005170_020--Hb_055277_010 Hb_005170_020--Hb_001115_100 Hb_104855_010 Hb_104855_010 Hb_005170_020--Hb_104855_010 Hb_010369_010 Hb_010369_010 Hb_005170_020--Hb_010369_010 Hb_027905_010--Hb_000777_020 Hb_027905_010--Hb_003209_040 Hb_027905_010--Hb_001195_650 Hb_000827_090 Hb_000827_090 Hb_027905_010--Hb_000827_090 Hb_010142_040 Hb_010142_040 Hb_027905_010--Hb_010142_040 Hb_019026_030 Hb_019026_030 Hb_027905_010--Hb_019026_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.0215 38.6557 16.3126 60.5238 1.78464 0.459087
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.58973 4.57725 0 0.439601 1.17481

CAGE analysis